Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP07_F_M05
         (669 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z95623-1|CAB09133.1|  314|Caenorhabditis elegans Hypothetical pr...    28   5.2  
Z92786-3|CAB63202.1|  488|Caenorhabditis elegans Hypothetical pr...    28   6.9  
U40028-3|AAW57826.1|  378|Caenorhabditis elegans Fucosyl transfe...    28   6.9  
AJ745073-1|CAG32979.1|  378|Caenorhabditis elegans alpha1,3-fuco...    28   6.9  

>Z95623-1|CAB09133.1|  314|Caenorhabditis elegans Hypothetical
           protein Y53C12C.1 protein.
          Length = 314

 Score = 28.3 bits (60), Expect = 5.2
 Identities = 17/48 (35%), Positives = 22/48 (45%)
 Frame = +2

Query: 131 RIEFERTSRRACHRQREGRCGVRDSTRCSFSRSQDQQFIKSQSSRPSG 274
           RI+   ++RRA  R+       RD  R   S + D   I SQS  P G
Sbjct: 246 RIQVWFSNRRAKWRKTNANGSDRDELRAERSETDDALSISSQSPSPGG 293


>Z92786-3|CAB63202.1|  488|Caenorhabditis elegans Hypothetical
           protein F47H4.6 protein.
          Length = 488

 Score = 27.9 bits (59), Expect = 6.9
 Identities = 17/54 (31%), Positives = 30/54 (55%)
 Frame = +3

Query: 225 EARINNSSSRRALVHLGVTVLYDFSKIFRNISTVRGE*SVCCHRRNGRQPSRVH 386
           EAR+  SS R +++ + V +L+ FSKI  ++ T+    ++    +  R PS  H
Sbjct: 383 EARVFESS-RNSILQIYVGILFHFSKIDVSLKTLSNSNAIQMRDKLLRSPSFEH 435


>U40028-3|AAW57826.1|  378|Caenorhabditis elegans Fucosyl
           transferase protein 5 protein.
          Length = 378

 Score = 27.9 bits (59), Expect = 6.9
 Identities = 9/15 (60%), Positives = 12/15 (80%)
 Frame = -3

Query: 163 GPPGCSFKFNAIYKY 119
           GPPGC  KF++ YK+
Sbjct: 229 GPPGCDVKFHSPYKF 243


>AJ745073-1|CAG32979.1|  378|Caenorhabditis elegans
           alpha1,3-fucosyltransferase homologueprotein.
          Length = 378

 Score = 27.9 bits (59), Expect = 6.9
 Identities = 9/15 (60%), Positives = 12/15 (80%)
 Frame = -3

Query: 163 GPPGCSFKFNAIYKY 119
           GPPGC  KF++ YK+
Sbjct: 229 GPPGCDVKFHSPYKF 243


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,332,827
Number of Sequences: 27780
Number of extensions: 312863
Number of successful extensions: 682
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 653
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 682
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1508017654
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)