Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP07_F_M04
         (653 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC4F6.10 |vps901|vps9a|guanyl-nucleotide exchange factor Vps90...    27   3.1  
SPCC2H8.04 |||sequence orphan|Schizosaccharomyces pombe|chr 3|||...    26   4.1  
SPCC31H12.05c |sds21||serine/threonine protein phosphatase Sds21...    26   4.1  
SPBPB2B2.09c |||2-dehydropantoate 2-reductase |Schizosaccharomyc...    26   5.5  
SPBC776.02c |dis2|sds1, bws1|serine/threonine protein phosphatas...    26   5.5  
SPBC11C11.04c |alp1||tubulin specific chaperone cofactor D |Schi...    25   7.2  
SPBC19F8.06c |meu22||amino acid permease, unknown 11|Schizosacch...    25   9.5  

>SPBC4F6.10 |vps901|vps9a|guanyl-nucleotide exchange factor Vps901
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 537

 Score = 26.6 bits (56), Expect = 3.1
 Identities = 15/44 (34%), Positives = 24/44 (54%), Gaps = 2/44 (4%)
 Frame = -3

Query: 426 IILNRVVSDIAYPYI--SYLPCGVSHFDSVDSLYSLPEFIEIFQ 301
           ++LNR+ + +  P I  S +P    H D V+    L E +E+FQ
Sbjct: 190 LVLNRLYTSLFSPEIAKSGIPLSSEHSDDVEEDRVLSEKMELFQ 233


>SPCC2H8.04 |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 266

 Score = 26.2 bits (55), Expect = 4.1
 Identities = 17/77 (22%), Positives = 36/77 (46%), Gaps = 5/77 (6%)
 Frame = +1

Query: 160 NEISMRSSVSYILSHAPGE-----SVMSHPDYGQHAQHHACLLVLVKGIGGMLKNFNKLW 324
           N+  +  S+S +L HA  E     + +S  D G   + H C+ +++  +  + K  +K W
Sbjct: 172 NKHRLIQSMSCMLRHAKLEDEFMKAYISEEDVGYADEIHKCIQMVLSDLDSIYKRESKNW 231

Query: 325 ERIQRINTIKVTDSAGQ 375
             + +   +   ++A Q
Sbjct: 232 HIVSQFYNMLELEAARQ 248


>SPCC31H12.05c |sds21||serine/threonine protein phosphatase
           Sds21|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 322

 Score = 26.2 bits (55), Expect = 4.1
 Identities = 27/89 (30%), Positives = 44/89 (49%), Gaps = 4/89 (4%)
 Frame = +1

Query: 292 GGMLKNFNKLWERIQRINTIKVTD--SAGQVRD-IWVRYVRDYPV-ENNDWGDFQTHRRL 459
           GG+  + N L ++IQRI  I+ TD    G + D +W    +D      ND G   T    
Sbjct: 170 GGLSPDLNSL-DQIQRI--IRPTDIPDTGLLCDLVWSDPEKDLTGWGENDRGVSYT---- 222

Query: 460 LGLITLSKFTNQVELNEVCRVHESLKVKY 546
            G   +S+F  + +L+ +CR H+ ++  Y
Sbjct: 223 FGADVVSRFLQKHDLDLICRAHQVVEDGY 251


>SPBPB2B2.09c |||2-dehydropantoate 2-reductase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 350

 Score = 25.8 bits (54), Expect = 5.5
 Identities = 18/97 (18%), Positives = 47/97 (48%)
 Frame = +1

Query: 46  TNINKIQNKSPAISLVSEWMQNTDHITQAPQXVKTE*SNEISMRSSVSYILSHAPGESVM 225
           + +N  ++K+  + +   + +N  H+    Q   +E S +++++S  + I++   G++  
Sbjct: 39  SRVNSFKDKNSTLKIDRLFEENVPHL--CCQVTASEPS-QLNVQSIENMIVTTKAGQTEN 95

Query: 226 SHPDYGQHAQHHACLLVLVKGIGGMLKNFNKLWERIQ 336
           +   Y  +   ++ +L +  G+G +     KLW   Q
Sbjct: 96  ALSKYLPYLSKNSNILFVQNGMGAVENVCGKLWPEEQ 132


>SPBC776.02c |dis2|sds1, bws1|serine/threonine protein phosphatase
           PP1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 327

 Score = 25.8 bits (54), Expect = 5.5
 Identities = 22/87 (25%), Positives = 40/87 (45%), Gaps = 2/87 (2%)
 Frame = +1

Query: 292 GGMLKNFNKLWERIQRINTIKVTDSAGQVRDI-WVRYVRDYPVENNDWGDFQTHRRL-LG 465
           GG+  + N + ++IQRI         G + D+ W     D   +   WGD         G
Sbjct: 173 GGLSPDLNSM-DQIQRIMRPTDVPDTGLLCDLLW----SDPDKDLTGWGDNDRGVSFTFG 227

Query: 466 LITLSKFTNQVELNEVCRVHESLKVKY 546
              +S+F ++ +++ VCR H+ ++  Y
Sbjct: 228 PDVVSRFLHKHDMDLVCRAHQVVEDGY 254


>SPBC11C11.04c |alp1||tubulin specific chaperone cofactor D
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1107

 Score = 25.4 bits (53), Expect = 7.2
 Identities = 14/56 (25%), Positives = 29/56 (51%)
 Frame = +1

Query: 409 YPVENNDWGDFQTHRRLLGLITLSKFTNQVELNEVCRVHESLKVKYSNTLYDSRAF 576
           +P + N   D  +H+ LL   +L KF+ Q +   +  + + ++  ++N +   RAF
Sbjct: 601 FPFDINRIHDLLSHKNLL---SLKKFSRQQQTKIILGILKGIQQIFANDIRVDRAF 653


>SPBC19F8.06c |meu22||amino acid permease, unknown
           11|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 574

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 9/20 (45%), Positives = 14/20 (70%)
 Frame = -1

Query: 71  LFWILFIFVYVAIFLGVLTV 12
           +FW +F+F  VA+F+  L V
Sbjct: 291 IFWRIFLFYIVALFMLTLVV 310


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,794,301
Number of Sequences: 5004
Number of extensions: 59349
Number of successful extensions: 146
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 142
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 145
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 295793106
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)