Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP07_F_M04
(653 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_06_0223 + 27669759-27670286 29 2.4
10_06_0140 + 11147019-11147791,11148301-11150524 29 4.3
09_04_0382 + 17135554-17136468,17136762-17136833,17137675-171377... 28 5.6
07_03_0969 + 23033007-23033093,23033179-23033304,23033376-23033531 28 5.6
02_05_0755 - 31519765-31519896,31520073-31520135,31520236-315203... 28 5.6
01_01_1208 + 9733010-9733114,9733920-9733979,9735254-9736280,973... 28 5.6
04_04_1357 + 32860677-32860781,32861484-32861588,32861678-328617... 28 7.5
07_01_1015 - 8633240-8633411,8633852-8633895 27 9.9
04_04_0416 + 25042937-25043350,25044038-25044238,25044343-250445... 27 9.9
01_05_0580 + 23398777-23399358,23399565-23399708,23399820-23400233 27 9.9
>01_06_0223 + 27669759-27670286
Length = 175
Score = 29.5 bits (63), Expect = 2.4
Identities = 14/35 (40%), Positives = 17/35 (48%)
Frame = +3
Query: 192 YIVSRPRRICDVSSRLWAARPTSRMPSSARQGNRR 296
Y V +PR +C R W A R +SA G RR
Sbjct: 102 YNVRQPRHLCRSCRRYWTAGGALRRVASASPGRRR 136
>10_06_0140 + 11147019-11147791,11148301-11150524
Length = 998
Score = 28.7 bits (61), Expect = 4.3
Identities = 13/30 (43%), Positives = 16/30 (53%)
Frame = +1
Query: 364 SAGQVRDIWVRYVRDYPVENNDWGDFQTHR 453
+AG VR W+R VRD + D D HR
Sbjct: 60 AAGDVRSAWIRGVRDLACDMEDCVDRFVHR 89
>09_04_0382 +
17135554-17136468,17136762-17136833,17137675-17137704,
17138744-17138817,17140022-17140367
Length = 478
Score = 28.3 bits (60), Expect = 5.6
Identities = 20/50 (40%), Positives = 26/50 (52%), Gaps = 3/50 (6%)
Frame = +1
Query: 346 TIKVTDSAGQVRDIWVRYVRDY--PVENNDWGDFQTHRR-LLGLITLSKF 486
T+ T SA V ++W VRD PV D GD R+ LG +TL +F
Sbjct: 106 TLPRTLSAKTVDEVWRNLVRDEPPPVGAADGGDMPPQRQSTLGEMTLEEF 155
>07_03_0969 + 23033007-23033093,23033179-23033304,23033376-23033531
Length = 122
Score = 28.3 bits (60), Expect = 5.6
Identities = 11/40 (27%), Positives = 22/40 (55%)
Frame = -1
Query: 392 THISLTCPAESVTLIVLILCIRSQSLLKFFNMPPIPLTST 273
T + ++ P SV +V + C +L N+PP P++++
Sbjct: 26 TVLLVSVPCSSVLRVVAVQCGHCSGILSAVNLPPSPVSAS 65
>02_05_0755 -
31519765-31519896,31520073-31520135,31520236-31520352,
31520553-31520642,31520897-31520984,31521462-31521531,
31521945-31522023,31523231-31523275,31523927-31524013,
31524101-31524184,31524304-31524483,31524562-31524702,
31524873-31524981,31525411-31525466,31525877-31525924,
31526021-31526159,31526710-31526817,31527138-31527164,
31527325-31527417,31527837-31527916,31528051-31528140,
31528286-31528376,31528503-31528591,31528756-31528794,
31530611-31530733
Length = 755
Score = 28.3 bits (60), Expect = 5.6
Identities = 11/23 (47%), Positives = 17/23 (73%)
Frame = -2
Query: 481 CLELSSQVVSDESESLPNHYSQQ 413
C ELSS++ S E+LP +Y++Q
Sbjct: 506 CYELSSELSSSTLEALPQNYAEQ 528
>01_01_1208 +
9733010-9733114,9733920-9733979,9735254-9736280,
9736332-9736621
Length = 493
Score = 28.3 bits (60), Expect = 5.6
Identities = 14/41 (34%), Positives = 19/41 (46%), Gaps = 1/41 (2%)
Frame = +3
Query: 192 YIVSRPRRICDVSSRLWAARPTSR-MPSSARQGNRRHVEKF 311
Y V +PR C R W A R +P A + +HV K+
Sbjct: 152 YNVHQPRHFCRNCQRYWTAGGAMRNVPVGAGRRRNKHVSKY 192
>04_04_1357 +
32860677-32860781,32861484-32861588,32861678-32861728,
32861829-32861949,32862495-32862616,32863032-32863133,
32863226-32863300,32863391-32863470,32863601-32863751,
32863850-32864080,32864221-32864517,32864638-32864751,
32864857-32865030
Length = 575
Score = 27.9 bits (59), Expect = 7.5
Identities = 10/31 (32%), Positives = 19/31 (61%)
Frame = +1
Query: 370 GQVRDIWVRYVRDYPVENNDWGDFQTHRRLL 462
G+V+D+W++ V+D ++ + Q H LL
Sbjct: 357 GKVKDVWLKLVKDLEIQRDRKDRGQVHLELL 387
>07_01_1015 - 8633240-8633411,8633852-8633895
Length = 71
Score = 27.5 bits (58), Expect = 9.9
Identities = 20/60 (33%), Positives = 31/60 (51%), Gaps = 1/60 (1%)
Frame = +1
Query: 436 DFQTHRRLLGLITLSKFTNQVELNEVCRVHESLKVKYSNTL-YDSRAFMFGPISNMKKPE 612
D Q R L+ LS+ + + L +V + L++K +L DS MFG I +KKP+
Sbjct: 12 DTQRCYRDASLLRLSERSEEKILKDVVHSVQLLELKQFFSLDKDSDMEMFGSIKKLKKPD 71
>04_04_0416 +
25042937-25043350,25044038-25044238,25044343-25044525,
25044975-25045084,25045317-25045376,25045620-25045911,
25046780-25046967,25047275-25048149,25048846-25049805,
25050025-25050068,25050860-25050925,25051176-25051364
Length = 1193
Score = 27.5 bits (58), Expect = 9.9
Identities = 15/53 (28%), Positives = 24/53 (45%)
Frame = +1
Query: 430 WGDFQTHRRLLGLITLSKFTNQVELNEVCRVHESLKVKYSNTLYDSRAFMFGP 588
W DFQ+ R++L ++ + + +L V Y + L SR F F P
Sbjct: 83 WEDFQSSRKVLAVVGICHLPSSPDLGRVAADFVDAARSYPSAL-ASRCFAFCP 134
>01_05_0580 + 23398777-23399358,23399565-23399708,23399820-23400233
Length = 379
Score = 27.5 bits (58), Expect = 9.9
Identities = 8/15 (53%), Positives = 10/15 (66%)
Frame = -3
Query: 147 FHXLWSLCYVICVLH 103
FH LW +C C+LH
Sbjct: 94 FHELWEICLYRCILH 108
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,722,066
Number of Sequences: 37544
Number of extensions: 334700
Number of successful extensions: 778
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 759
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 778
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1632177336
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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