Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP07_F_M03
(609 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U64844-3|AAB18306.1| 196|Caenorhabditis elegans Ribosomal prote... 250 4e-67
U42845-1|AAA83599.1| 196|Caenorhabditis elegans Ribosomal prote... 250 4e-67
AL161712-18|CAC70140.1| 448|Caenorhabditis elegans Hypothetical... 30 1.1
U41541-3|AAK18894.1| 7829|Caenorhabditis elegans Hypothetical pr... 29 2.6
AF016685-7|AAG24151.1| 341|Caenorhabditis elegans Seven tm rece... 29 2.6
U29488-1|AAA68773.2| 338|Caenorhabditis elegans Serpentine rece... 28 6.0
Z81465-3|CAC42253.4| 800|Caenorhabditis elegans Hypothetical pr... 27 7.9
AF016685-8|AAG24150.1| 340|Caenorhabditis elegans Seven tm rece... 27 7.9
>U64844-3|AAB18306.1| 196|Caenorhabditis elegans Ribosomal protein,
large subunitprotein 11.1 protein.
Length = 196
Score = 250 bits (613), Expect = 4e-67
Identities = 118/150 (78%), Positives = 129/150 (86%)
Frame = +2
Query: 98 NVMRNLHIRKLCLNICVGESGDRLTRAAKVLEQLTGQQPVFSKARYTVRSFGIRRNEKIA 277
NVMR L I+KLCLNICVGESGDRLTRAAKVLEQLTGQ PVFSKARYTVR+FGIRRNEKIA
Sbjct: 17 NVMRELKIQKLCLNICVGESGDRLTRAAKVLEQLTGQTPVFSKARYTVRTFGIRRNEKIA 76
Query: 278 VHCTVRGAKAEEILERGLKVREYELRRDNFSATGNFGFGIQEHIDLGIKYDPSIGIYGLD 457
VHCTVRG KAEEILE+GLKV+EYEL ++NFS TGNFGFG+QEHIDLGIKYDP IGIYG+D
Sbjct: 77 VHCTVRGPKAEEILEKGLKVKEYELFKENFSDTGNFGFGVQEHIDLGIKYDPGIGIYGMD 136
Query: 458 FYVVLGRPGFNVXHXXXKTGKVGFPHRLTK 547
FYVVL R G V G++G HR+ K
Sbjct: 137 FYVVLNRNGVRVSKRRRAPGRIGPSHRVDK 166
Score = 33.9 bits (74), Expect = 0.091
Identities = 13/20 (65%), Positives = 16/20 (80%)
Frame = +3
Query: 546 REDAMKWFPQKYDGIILNSK 605
+E+ +KWF QKYDGIIL K
Sbjct: 166 KEETIKWFQQKYDGIILPPK 185
>U42845-1|AAA83599.1| 196|Caenorhabditis elegans Ribosomal protein,
large subunitprotein 11.2 protein.
Length = 196
Score = 250 bits (613), Expect = 4e-67
Identities = 118/150 (78%), Positives = 130/150 (86%)
Frame = +2
Query: 98 NVMRNLHIRKLCLNICVGESGDRLTRAAKVLEQLTGQQPVFSKARYTVRSFGIRRNEKIA 277
NVMR L I+KLCLNICVGESGDRLTRAAKVLEQLTGQ PVFSKARYTVR+FGIRRNEKIA
Sbjct: 17 NVMRELKIQKLCLNICVGESGDRLTRAAKVLEQLTGQTPVFSKARYTVRTFGIRRNEKIA 76
Query: 278 VHCTVRGAKAEEILERGLKVREYELRRDNFSATGNFGFGIQEHIDLGIKYDPSIGIYGLD 457
VHCTVRG KAEEILE+GLKV+EYEL ++NFS TGNFGFG+QEHIDLGIKYDPSIGIYG+D
Sbjct: 77 VHCTVRGPKAEEILEKGLKVKEYELYKENFSDTGNFGFGVQEHIDLGIKYDPSIGIYGMD 136
Query: 458 FYVVLGRPGFNVXHXXXKTGKVGFPHRLTK 547
FYVVL R G + G+VG HR+ +
Sbjct: 137 FYVVLDRAGRRIAKRRRAPGRVGPSHRVER 166
Score = 36.3 bits (80), Expect = 0.017
Identities = 14/21 (66%), Positives = 18/21 (85%)
Frame = +3
Query: 543 QREDAMKWFPQKYDGIILNSK 605
+RE+++KWF QKYDGIIL K
Sbjct: 165 EREESIKWFQQKYDGIILPPK 185
>AL161712-18|CAC70140.1| 448|Caenorhabditis elegans Hypothetical
protein Y66D12A.23 protein.
Length = 448
Score = 30.3 bits (65), Expect = 1.1
Identities = 17/54 (31%), Positives = 27/54 (50%), Gaps = 1/54 (1%)
Frame = +2
Query: 287 TVRGAKAEEILERGLKVREY-ELRRDNFSATGNFGFGIQEHIDLGIKYDPSIGI 445
++R AEE+ RG + Y E+RR TG FG G + + I + S+ +
Sbjct: 353 SLREQSAEELQRRGCGIDWYLEMRRRGQPPTGGFGIGFERMLQYLIFFRKSLNL 406
>U41541-3|AAK18894.1| 7829|Caenorhabditis elegans Hypothetical protein
C41A3.1 protein.
Length = 7829
Score = 29.1 bits (62), Expect = 2.6
Identities = 14/46 (30%), Positives = 25/46 (54%)
Frame = -3
Query: 388 AKITRGGEVVTPQFIFSDFQTPLKDFFCFSSSDCTMDSNLFITTDT 251
AK+ + G ++ PQ FS+F+ + FF + T+ N I+ D+
Sbjct: 5666 AKMLQTG-IIPPQVNFSEFRDGMGQFFTVNGKKSTISQNSLISIDS 5710
>AF016685-7|AAG24151.1| 341|Caenorhabditis elegans Seven tm
receptor protein 86 protein.
Length = 341
Score = 29.1 bits (62), Expect = 2.6
Identities = 13/31 (41%), Positives = 18/31 (58%), Gaps = 1/31 (3%)
Frame = -3
Query: 349 FIFSDFQTPLKDFF-CFSSSDCTMDSNLFIT 260
++ DF+ +KDFF C SD T S +F T
Sbjct: 300 YVIKDFRIGVKDFFKCGKKSDNTSSSTIFTT 330
>U29488-1|AAA68773.2| 338|Caenorhabditis elegans Serpentine
receptor, class a (alpha)protein 31 protein.
Length = 338
Score = 27.9 bits (59), Expect = 6.0
Identities = 15/34 (44%), Positives = 20/34 (58%)
Frame = -3
Query: 304 FSSSDCTMDSNLFITTDTKRPHCIPSLGKYRLLS 203
F SS+C ++SNL+ T+ C SL RLLS
Sbjct: 97 FQSSECLIESNLYYYTNLFSSLCCISLFFDRLLS 130
>Z81465-3|CAC42253.4| 800|Caenorhabditis elegans Hypothetical
protein C09F9.3 protein.
Length = 800
Score = 27.5 bits (58), Expect = 7.9
Identities = 13/41 (31%), Positives = 23/41 (56%), Gaps = 3/41 (7%)
Frame = -3
Query: 295 SDCTMDSNLFITTDTKRPHCIPSLGK---YRLLSCELLQHL 182
S CT+D F D+K+ C+ S+ K Y +++ E+ H+
Sbjct: 205 SICTIDGQRFSLGDSKKNFCLQSVSKAFNYAIVASEIGSHV 245
>AF016685-8|AAG24150.1| 340|Caenorhabditis elegans Seven tm
receptor protein 85 protein.
Length = 340
Score = 27.5 bits (58), Expect = 7.9
Identities = 12/37 (32%), Positives = 20/37 (54%)
Frame = -3
Query: 349 FIFSDFQTPLKDFFCFSSSDCTMDSNLFITTDTKRPH 239
++ DF+T +K+FF + T S+ +TT K H
Sbjct: 300 YVIKDFRTAVKNFFKRGTKSGTSPSSAVLTTKKKAWH 336
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,138,092
Number of Sequences: 27780
Number of extensions: 286336
Number of successful extensions: 734
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 711
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 734
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1311096392
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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