Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP07_F_M02
         (471 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U70841-1|AAC47455.1|  377|Apis mellifera ultraviolet sensitive o...    23   1.2  
AF004168-1|AAC13417.1|  377|Apis mellifera blue-sensitive opsin ...    23   1.2  
DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholi...    22   2.9  
EF625898-1|ABR45905.1|  686|Apis mellifera hexamerin protein.          22   3.8  
EF589162-1|ABQ84439.1|  686|Apis mellifera hexamerin 70c protein.      22   3.8  

>U70841-1|AAC47455.1|  377|Apis mellifera ultraviolet sensitive
           opsin protein.
          Length = 377

 Score = 23.4 bits (48), Expect = 1.2
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = -1

Query: 234 ITDNEDNKKSFSLIYNIAYTIP 169
           +TD+ED K   + I+  AY IP
Sbjct: 211 LTDDEDTKVFVTCIFIWAYVIP 232


>AF004168-1|AAC13417.1|  377|Apis mellifera blue-sensitive opsin
           protein.
          Length = 377

 Score = 23.4 bits (48), Expect = 1.2
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = -1

Query: 234 ITDNEDNKKSFSLIYNIAYTIP 169
           +TD+ED K   + I+  AY IP
Sbjct: 211 LTDDEDTKVFVTCIFIWAYVIP 232


>DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholine
           receptor alpha9subunit protein.
          Length = 431

 Score = 22.2 bits (45), Expect = 2.9
 Identities = 10/24 (41%), Positives = 16/24 (66%)
 Frame = +2

Query: 194 IKENDFLLSSLSVIGKLYINNNEV 265
           + E+D  LSS  ++G+   NN+EV
Sbjct: 368 LTESDTKLSSQGILGEDVENNSEV 391


>EF625898-1|ABR45905.1|  686|Apis mellifera hexamerin protein.
          Length = 686

 Score = 21.8 bits (44), Expect = 3.8
 Identities = 9/28 (32%), Positives = 17/28 (60%), Gaps = 1/28 (3%)
 Frame = +1

Query: 136 FIWMFIX-MFLIRNSVSNIINQRKRFFV 216
           F+W +   MFL RN++   +N  +++ V
Sbjct: 81  FLWWYKQGMFLSRNAIFTPLNSEQKYEV 108


>EF589162-1|ABQ84439.1|  686|Apis mellifera hexamerin 70c protein.
          Length = 686

 Score = 21.8 bits (44), Expect = 3.8
 Identities = 9/28 (32%), Positives = 17/28 (60%), Gaps = 1/28 (3%)
 Frame = +1

Query: 136 FIWMFIX-MFLIRNSVSNIINQRKRFFV 216
           F+W +   MFL RN++   +N  +++ V
Sbjct: 81  FLWWYKQGMFLSRNAIFTPLNSEQKYEV 108


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 106,898
Number of Sequences: 438
Number of extensions: 1907
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 12682287
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)