Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP07_F_L23
(655 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC29A3.04 |rpl8||60S ribosomal protein L7a |Schizosaccharomyce... 169 4e-43
SPAC607.03c |snu13||U3 snoRNP-associated protein Snu13|Schizosac... 42 1e-04
SPAC6F12.12 |par2|pbp2|protein phosphatase regulatory subunit Pa... 26 5.5
SPCC830.10 |||nucleoside triphosphatase |Schizosaccharomyces pom... 26 5.5
SPCC16C4.07 |scw1||RNA-binding protein Scw1|Schizosaccharomyces ... 25 7.2
SPCC24B10.15 |||PINc domain|Schizosaccharomyces pombe|chr 3|||Ma... 25 7.2
SPAC13F5.01c |msh1|SPAC23C11.18c|MutS protein homolog 1|Schizosa... 25 7.2
SPAC1851.03 |ckb1||CK2 family regulatory subunit |Schizosaccharo... 25 9.5
SPCC1281.01 |ags1|mok1, SPCC338.01c, SPCC17A7.01|alpha-1,4-gluca... 25 9.5
>SPBC29A3.04 |rpl8||60S ribosomal protein L7a |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 259
Score = 169 bits (410), Expect = 4e-43
Identities = 84/156 (53%), Positives = 104/156 (66%), Gaps = 1/156 (0%)
Frame = +2
Query: 176 NPLFEKRPKNFAIGQGIQPTRDLSRFVRWPKYIRIQRQKAVLQRRLKVPPPINQFTQTLD 355
NPLF RP++F IGQ IQP RDLSRFV+WP+YIR+QR++ +L RLKVPP I QF +TLD
Sbjct: 24 NPLFVSRPRSFGIGQDIQPKRDLSRFVKWPEYIRLQRRRKILNLRLKVPPAIAQFQKTLD 83
Query: 356 KTTAKGLFKILEKYRPET-XXXXXXXXXXXXXXXXXXXXXXXXXRPNTIRSGTNTVTKLV 532
K TA +FK+L KYRPET +P ++ G N V L+
Sbjct: 84 KNTATQVFKLLNKYRPETAAEKKQRLVAEAEAVANGKSAQDVSKKPYNVKYGLNHVVALI 143
Query: 533 EKKKAQLVVIAHDVDPIELVLFLPALCRKMGVHTAL 640
E KKA+LV+IA DVDPIELV+FLPALC+KMGV A+
Sbjct: 144 EAKKAKLVLIASDVDPIELVVFLPALCKKMGVPYAI 179
>SPAC607.03c |snu13||U3 snoRNP-associated protein
Snu13|Schizosaccharomyces pombe|chr 1|||Manual
Length = 125
Score = 41.5 bits (93), Expect = 1e-04
Identities = 17/44 (38%), Positives = 27/44 (61%)
Frame = +2
Query: 497 IRSGTNTVTKLVEKKKAQLVVIAHDVDPIELVLFLPALCRKMGV 628
+R G N TK + + ++ +V+A D +PIE++L LP LC V
Sbjct: 32 LRKGANEATKTLNRGISEFIVMAADTEPIEILLHLPLLCEDKNV 75
>SPAC6F12.12 |par2|pbp2|protein phosphatase regulatory subunit
Par2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 627
Score = 25.8 bits (54), Expect = 5.5
Identities = 14/34 (41%), Positives = 19/34 (55%)
Frame = +2
Query: 290 KAVLQRRLKVPPPINQFTQTLDKTTAKGLFKILE 391
KAVL LK P IN F + L + +F++LE
Sbjct: 463 KAVLTGILKYWPRINSFKELLFLNEIEDIFEVLE 496
>SPCC830.10 |||nucleoside triphosphatase |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 188
Score = 25.8 bits (54), Expect = 5.5
Identities = 9/24 (37%), Positives = 14/24 (58%)
Frame = +1
Query: 493 YHPIRHKHSHQAGREEEGAACGHR 564
+ P HKH++ +EE +C HR
Sbjct: 149 FQPNGHKHTYAEMTDEERNSCSHR 172
>SPCC16C4.07 |scw1||RNA-binding protein Scw1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 561
Score = 25.4 bits (53), Expect = 7.2
Identities = 12/30 (40%), Positives = 16/30 (53%)
Frame = +1
Query: 274 PHPAPEGCTSASSESAPSDQPIYPDTGQDY 363
PHP SA S ++P P+ P T +DY
Sbjct: 355 PHPRVFSANSAFSTTSPP--PLTPSTSRDY 382
>SPCC24B10.15 |||PINc domain|Schizosaccharomyces pombe|chr
3|||Manual
Length = 462
Score = 25.4 bits (53), Expect = 7.2
Identities = 16/57 (28%), Positives = 24/57 (42%)
Frame = -1
Query: 472 LIFLGNLSFSSFPQPLFPGCFSLRPVFLQNLEKALSCSLVQCLGKLVDRRGHFQTTL 302
L F L +S Q FP FS L+NL + ++ Q L + R +T+
Sbjct: 197 LSFSKGLEAASIVQTSFPSAFSSNSENLENLSMDIDLTVSQPLATATNHRNQGASTV 253
>SPAC13F5.01c |msh1|SPAC23C11.18c|MutS protein homolog
1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 941
Score = 25.4 bits (53), Expect = 7.2
Identities = 12/41 (29%), Positives = 22/41 (53%)
Frame = +2
Query: 500 RSGTNTVTKLVEKKKAQLVVIAHDVDPIELVLFLPALCRKM 622
+SG+ +T+ + +V I + +D +E LP LC K+
Sbjct: 378 KSGSRLLTRRLCAPSTNIVEINNRLDLVEKFKLLPELCSKV 418
>SPAC1851.03 |ckb1||CK2 family regulatory subunit
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 231
Score = 25.0 bits (52), Expect = 9.5
Identities = 9/13 (69%), Positives = 13/13 (100%)
Frame = +2
Query: 362 TAKGLFKILEKYR 400
TA+GL+K+LEKY+
Sbjct: 94 TAQGLYKMLEKYK 106
>SPCC1281.01 |ags1|mok1, SPCC338.01c, SPCC17A7.01|alpha-1,4-glucan
synthase Ags1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 2410
Score = 25.0 bits (52), Expect = 9.5
Identities = 16/52 (30%), Positives = 26/52 (50%)
Frame = -3
Query: 326 EGALSDDAEVQPSGAGCGYTWAILQIWTSHELAECPDQWQSSLASSRREDSR 171
+GAL A V G G+ +++ T H L + Q +L+SS+R +R
Sbjct: 1538 KGALGIGARVGGLGQMPGWWYSVESSATPHLLKQFEQACQQALSSSQRTRAR 1589
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,330,757
Number of Sequences: 5004
Number of extensions: 40754
Number of successful extensions: 126
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 120
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 125
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 295793106
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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