Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP07_F_L23
         (655 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC006729-4|AAK84600.1|  265|Caenorhabditis elegans Ribosomal pro...   185   3e-47
AC006729-3|AAM15612.1|  245|Caenorhabditis elegans Ribosomal pro...   173   9e-44
AC084159-4|AAK39366.1|  234|Caenorhabditis elegans Hypothetical ...   120   7e-28
AC084159-5|AAM69075.1|  199|Caenorhabditis elegans Hypothetical ...   100   1e-21
Z49911-4|CAA90127.1|  128|Caenorhabditis elegans Hypothetical pr...    40   0.001
AF016444-5|AAB65932.1|  330|Caenorhabditis elegans Serpentine re...    36   0.025
AL023844-2|CAA19527.1|  163|Caenorhabditis elegans Hypothetical ...    31   0.94 
U23486-3|AAL38955.1|  529|Caenorhabditis elegans Hypothetical pr...    28   6.7  
U67950-3|AAK84565.1|  138|Caenorhabditis elegans Hypothetical pr...    27   8.8  

>AC006729-4|AAK84600.1|  265|Caenorhabditis elegans Ribosomal
           protein, large subunitprotein 7A, isoform a protein.
          Length = 265

 Score =  185 bits (450), Expect = 3e-47
 Identities = 86/155 (55%), Positives = 109/155 (70%)
 Frame = +2

Query: 176 NPLFEKRPKNFAIGQGIQPTRDLSRFVRWPKYIRIQRQKAVLQRRLKVPPPINQFTQTLD 355
           NPLFEKR +NF IGQ IQP +D++RFV+WPKYIR+QRQ A+LQ+RLKVPP INQF   LD
Sbjct: 30  NPLFEKRARNFNIGQDIQPKKDVTRFVKWPKYIRLQRQSAILQKRLKVPPTINQFRTALD 89

Query: 356 KTTAKGLFKILEKYRPETXXXXXXXXXXXXXXXXXXXXXXXXXRPNTIRSGTNTVTKLVE 535
             +A+  FK+L+KYRPE+                         RPNT+R G NT+T+LVE
Sbjct: 90  SQSARQAFKLLDKYRPESTEAKKNRLRARAEARAAGKKEEVTKRPNTVRHGVNTITRLVE 149

Query: 536 KKKAQLVVIAHDVDPIELVLFLPALCRKMGVHTAL 640
            ++AQLV+IAHDV+P+E+VL LPALCRK  V  A+
Sbjct: 150 TRRAQLVLIAHDVNPLEIVLHLPALCRKYNVPYAI 184


>AC006729-3|AAM15612.1|  245|Caenorhabditis elegans Ribosomal
           protein, large subunitprotein 7A, isoform c protein.
          Length = 245

 Score =  173 bits (421), Expect = 9e-44
 Identities = 86/155 (55%), Positives = 109/155 (70%)
 Frame = +2

Query: 176 NPLFEKRPKNFAIGQGIQPTRDLSRFVRWPKYIRIQRQKAVLQRRLKVPPPINQFTQTLD 355
           NPLFEKR +NF IGQ IQP +D++RFV+WPKYIR+QRQ A+LQ+RLKVPP INQF   LD
Sbjct: 30  NPLFEKRARNFNIGQDIQPKKDVTRFVKWPKYIRLQRQSAILQKRLKVPPTINQFRTALD 89

Query: 356 KTTAKGLFKILEKYRPETXXXXXXXXXXXXXXXXXXXXXXXXXRPNTIRSGTNTVTKLVE 535
             +A+  FK+L+KYRPE+                         RPNT+R G NT+T+LVE
Sbjct: 90  SQSARQAFKLLDKYRPES--------------------TEVTKRPNTVRHGVNTITRLVE 129

Query: 536 KKKAQLVVIAHDVDPIELVLFLPALCRKMGVHTAL 640
            ++AQLV+IAHDV+P+E+VL LPALCRK  V  A+
Sbjct: 130 TRRAQLVLIAHDVNPLEIVLHLPALCRKYNVPYAI 164


>AC084159-4|AAK39366.1|  234|Caenorhabditis elegans Hypothetical
           protein Y73B3A.18a protein.
          Length = 234

 Score =  120 bits (290), Expect = 7e-28
 Identities = 52/78 (66%), Positives = 65/78 (83%)
 Frame = +2

Query: 176 NPLFEKRPKNFAIGQGIQPTRDLSRFVRWPKYIRIQRQKAVLQRRLKVPPPINQFTQTLD 355
           NPLFEKR +NF IGQ IQP +D++RFV+WPKYIR+QRQ A+LQ+RLKVPP INQF   LD
Sbjct: 133 NPLFEKRARNFNIGQDIQPKKDVTRFVKWPKYIRLQRQSAILQKRLKVPPTINQFRTALD 192

Query: 356 KTTAKGLFKILEKYRPET 409
             +A+  FK+L+KYRPE+
Sbjct: 193 SHSARQAFKLLDKYRPES 210


>AC084159-5|AAM69075.1|  199|Caenorhabditis elegans Hypothetical
           protein Y73B3A.18b protein.
          Length = 199

 Score =  100 bits (239), Expect = 1e-21
 Identities = 43/60 (71%), Positives = 51/60 (85%)
 Frame = +2

Query: 176 NPLFEKRPKNFAIGQGIQPTRDLSRFVRWPKYIRIQRQKAVLQRRLKVPPPINQFTQTLD 355
           NPLFEKR +NF IGQ IQP +D++RFV+WPKYIR+QRQ A+LQ+RLKVPP INQF   LD
Sbjct: 133 NPLFEKRARNFNIGQDIQPKKDVTRFVKWPKYIRLQRQSAILQKRLKVPPTINQFRTALD 192


>Z49911-4|CAA90127.1|  128|Caenorhabditis elegans Hypothetical
           protein M28.5 protein.
          Length = 128

 Score = 40.3 bits (90), Expect = 0.001
 Identities = 15/44 (34%), Positives = 28/44 (63%)
 Frame = +2

Query: 497 IRSGTNTVTKLVEKKKAQLVVIAHDVDPIELVLFLPALCRKMGV 628
           ++ G N  TK + +  ++++V+A D +P+E++L LP LC    V
Sbjct: 35  LKKGANEATKTLNRGISEIIVMAADAEPLEILLHLPLLCEDKNV 78


>AF016444-5|AAB65932.1|  330|Caenorhabditis elegans Serpentine
           receptor, class ab (class a-like) protein 6 protein.
          Length = 330

 Score = 35.9 bits (79), Expect = 0.025
 Identities = 17/43 (39%), Positives = 29/43 (67%), Gaps = 3/43 (6%)
 Frame = -1

Query: 451 SFSSFP--QPLFPGCFSLRPVFLQNLEKA-LSCSLVQCLGKLV 332
           SF SFP  QP+   C +++P F+ N+EKA + C ++Q  G+++
Sbjct: 163 SFLSFPFSQPVMNYCTAVKPGFVTNIEKAFIGCLIIQIGGRII 205


>AL023844-2|CAA19527.1|  163|Caenorhabditis elegans Hypothetical
           protein Y48A6B.3 protein.
          Length = 163

 Score = 30.7 bits (66), Expect = 0.94
 Identities = 11/42 (26%), Positives = 24/42 (57%)
 Frame = +2

Query: 494 TIRSGTNTVTKLVEKKKAQLVVIAHDVDPIELVLFLPALCRK 619
           T+R G   V K + + +  + ++A +V PI++   +P +C +
Sbjct: 68  TLREGIKDVQKELRRNEKGICILAGNVSPIDVYSHIPGICEE 109


>U23486-3|AAL38955.1|  529|Caenorhabditis elegans Hypothetical
           protein F07F6.4 protein.
          Length = 529

 Score = 27.9 bits (59), Expect = 6.7
 Identities = 12/17 (70%), Positives = 14/17 (82%)
 Frame = +3

Query: 324 LRSTNLPRHWTRLQLRA 374
           +RSTNL  +WT LQLRA
Sbjct: 65  VRSTNLDTNWTWLQLRA 81


>U67950-3|AAK84565.1|  138|Caenorhabditis elegans Hypothetical
           protein T01B6.4 protein.
          Length = 138

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 14/41 (34%), Positives = 21/41 (51%)
 Frame = -3

Query: 263 AILQIWTSHELAECPDQWQSSLASSRREDSRSSWAQPF*PP 141
           AI+ +  S+   E P+QW+     S+ ED   SW +   PP
Sbjct: 12  AIIVVNASYRATESPEQWRQRFLKSQSED--PSWLRFPTPP 50


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,046,050
Number of Sequences: 27780
Number of extensions: 237544
Number of successful extensions: 653
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 618
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 650
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1455289764
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)