Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP07_F_L14
(653 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC29A4.02c |||translation elongation factor EF-1 gamma subunit... 50 2e-07
SPCC1183.02 |||glutathione S-transferase |Schizosaccharomyces po... 35 0.012
SPAC30C2.04 |||cofactor for methionyl-and glutamyl-tRNA syntheta... 29 0.44
SPAC14C4.04 |B22918-2||hypothetical protein|Schizosaccharomyces ... 27 1.8
SPBC28F2.09 |||transcription factor TFIIA complex large subunit ... 26 4.1
SPAC16.05c |sfp1||transcription factor Sfp1 |Schizosaccharomyces... 26 4.1
SPBC16A3.11 |eso1||sister chromatid cohesion protein Eso1|Schizo... 26 4.1
SPBC3D6.13c |||protein disulfide isomerase |Schizosaccharomyces ... 26 5.5
SPBC19G7.01c |msh2|swi8, mut3, SPBC24C6.12c|MutS protein homolog... 26 5.5
SPAPB1E7.06c |eme1||Holliday junction resolvase subunit Eme1|Sch... 25 7.2
SPAC1002.16c |||nicotinic acid plasma membrane transporter |Schi... 25 7.2
SPAC22E12.11c |set3||histone lysine methyltransferase Set3|Schiz... 25 9.5
SPCC1183.03c |||frataxin homolog|Schizosaccharomyces pombe|chr 3... 25 9.5
>SPAC29A4.02c |||translation elongation factor EF-1 gamma subunit
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 409
Score = 50.4 bits (115), Expect = 2e-07
Identities = 35/115 (30%), Positives = 60/115 (52%), Gaps = 4/115 (3%)
Frame = +3
Query: 147 NKSEDFLKKFPAGKVPAFESADGKVLLTESNAIAYYVAN----ESLRGGDLATQARVWQW 314
N D KFP K+P F DG L+E+ AIA+Y+A+ +L G +A+V Q+
Sbjct: 38 NFPADLAAKFPLQKMPVFVGKDG-FPLSETLAIAFYLASLNKTRALNGTTAEEKAKVLQY 96
Query: 315 ASWSDSELLPASCAWVFPYLGIMQFNKQNVERAKSDLLAALKVLDGHLLTRTFLV 479
S+++SEL A + P + +++Q + A++ + D L ++T+LV
Sbjct: 97 CSFTNSELPGAFRPIIAPRVFGAPYDEQAAKEAETAIALIFARFDEELASKTYLV 151
Score = 31.5 bits (68), Expect = 0.11
Identities = 15/52 (28%), Positives = 27/52 (51%)
Frame = +1
Query: 475 LFTERITLADVIVFSTLLHAFQHVLDPSVRSSLINVQRWFLTVAHQPQVSAV 630
L R+TLAD+ L +VL S + ++ R++ T+ HQ ++ A+
Sbjct: 150 LVGSRLTLADIFFTCFLKFGATYVLTKSYLAKYTHIYRYYQTIYHQAKLDAI 201
>SPCC1183.02 |||glutathione S-transferase |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 220
Score = 34.7 bits (76), Expect = 0.012
Identities = 16/49 (32%), Positives = 28/49 (57%)
Frame = +1
Query: 475 LFTERITLADVIVFSTLLHAFQHVLDPSVRSSLINVQRWFLTVAHQPQV 621
L +R TLAD+ S L F ++D R L ++ R+++T+ HQ ++
Sbjct: 155 LVGDRFTLADLFFGSLLRIFFNSIIDEKTRKELPHLTRYYITMFHQAKL 203
Score = 33.1 bits (72), Expect = 0.036
Identities = 27/117 (23%), Positives = 54/117 (46%), Gaps = 8/117 (6%)
Frame = +3
Query: 153 SEDFLKKFPAGKVPAFESADGKVLLTESNAIAYYVA------NESLRGGDLATQARVWQW 314
S D KFP K+P F ADG L + Y+ E L + +A + +W
Sbjct: 40 SADLAAKFPLQKLPVFIGADGFELSEVIAIVKYFYEKGKHNDKEGLGPVNEVEEAEMLKW 99
Query: 315 ASWSDSELL-PASC-AWVFPYLGIMQFNKQNVERAKSDLLAALKVLDGHLLTRTFLV 479
+ + +++ P + WV + G + + ++ + + + + +LK+ + + RT+LV
Sbjct: 100 MCFINFDIVTPQNVRPWVGMFRGNIPYEEKPFKESATRAIDSLKIPNELVKDRTYLV 156
>SPAC30C2.04 |||cofactor for methionyl-and glutamyl-tRNA synthetases
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 450
Score = 29.5 bits (63), Expect = 0.44
Identities = 16/53 (30%), Positives = 28/53 (52%)
Frame = +1
Query: 490 ITLADVIVFSTLLHAFQHVLDPSVRSSLINVQRWFLTVAHQPQVSAVGGSLTL 648
I++AD+ V++ + H++ L L NV RWF + HQ V S+++
Sbjct: 144 ISVADLAVYARI-HSYICGLSAKEGYKLNNVCRWFDFIQHQESVMEAANSMSM 195
>SPAC14C4.04 |B22918-2||hypothetical protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 267
Score = 27.5 bits (58), Expect = 1.8
Identities = 13/33 (39%), Positives = 18/33 (54%), Gaps = 1/33 (3%)
Frame = +1
Query: 283 IWLPKPVSGSGHHGLTVNYCL-LPVLGSSLTLV 378
+W+P PV SG T+ C+ LP G +T V
Sbjct: 23 LWVPTPVGRSGRKHRTLKMCIVLPDTGYDVTQV 55
>SPBC28F2.09 |||transcription factor TFIIA complex large subunit
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 369
Score = 26.2 bits (55), Expect = 4.1
Identities = 12/25 (48%), Positives = 14/25 (56%)
Frame = -2
Query: 223 STFPSALSNAGTFPAGNFFKKSSDL 149
+TFP A + GTFP G F S L
Sbjct: 52 ATFPWAQAPVGTFPIGQLFDPVSGL 76
>SPAC16.05c |sfp1||transcription factor Sfp1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 442
Score = 26.2 bits (55), Expect = 4.1
Identities = 11/19 (57%), Positives = 13/19 (68%)
Frame = +1
Query: 421 TYWPP*KYWTDIFSHAPSL 477
TY PP Y D+FS APS+
Sbjct: 257 TYLPPFNYDHDVFSFAPSV 275
>SPBC16A3.11 |eso1||sister chromatid cohesion protein
Eso1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 872
Score = 26.2 bits (55), Expect = 4.1
Identities = 12/29 (41%), Positives = 18/29 (62%)
Frame = +3
Query: 234 SNAIAYYVANESLRGGDLATQARVWQWAS 320
S + A Y+ NE+LR G + +R+W AS
Sbjct: 780 STSSAVYIKNENLRKGFVLGISRIWVSAS 808
>SPBC3D6.13c |||protein disulfide isomerase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 726
Score = 25.8 bits (54), Expect = 5.5
Identities = 11/37 (29%), Positives = 21/37 (56%)
Frame = -1
Query: 548 STCWKACSSVLKTMTSASVILSVNKEGACEKMSVQYF 438
ST W A ++ ++ + + I + AC++ S+QYF
Sbjct: 317 STAWYAMANRMRGKLNVAHINCAVSKRACKQYSIQYF 353
>SPBC19G7.01c |msh2|swi8, mut3, SPBC24C6.12c|MutS protein homolog
2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 982
Score = 25.8 bits (54), Expect = 5.5
Identities = 11/25 (44%), Positives = 15/25 (60%)
Frame = +1
Query: 331 VNYCLLPVLGSSLTLVSCNSTNRML 405
V + L+P LG L + SCN+ R L
Sbjct: 259 VTHALVPELGLQLAMASCNALLRYL 283
>SPAPB1E7.06c |eme1||Holliday junction resolvase subunit
Eme1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 738
Score = 25.4 bits (53), Expect = 7.2
Identities = 16/63 (25%), Positives = 30/63 (47%)
Frame = +3
Query: 51 IXENFRAYKALIAAQYSGTDVKVAPNFVFGETNKSEDFLKKFPAGKVPAFESADGKVLLT 230
I F++ KA + QY+ +FG +K ++F K+ ++ F S + +L+
Sbjct: 552 IPNYFKSLKAELNRQYAAAVNSGTRPLLFGSLSKYQNFTKEKLESEIVRF-SFEHSILIN 610
Query: 231 ESN 239
SN
Sbjct: 611 TSN 613
>SPAC1002.16c |||nicotinic acid plasma membrane transporter
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 499
Score = 25.4 bits (53), Expect = 7.2
Identities = 10/23 (43%), Positives = 15/23 (65%)
Frame = +1
Query: 286 WLPKPVSGSGHHGLTVNYCLLPV 354
+LP +SG G+ L+V Y +PV
Sbjct: 308 FLPAIISGMGYTSLSVQYMTIPV 330
>SPAC22E12.11c |set3||histone lysine methyltransferase
Set3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 859
Score = 25.0 bits (52), Expect = 9.5
Identities = 16/33 (48%), Positives = 18/33 (54%)
Frame = +1
Query: 541 HVLDPSVRSSLINVQRWFLTVAHQPQVSAVGGS 639
HV D RSS +N R T +H P VS VG S
Sbjct: 694 HVHDTQ-RSSDVNFSRQNGTRSHSPSVSPVGFS 725
>SPCC1183.03c |||frataxin homolog|Schizosaccharomyces pombe|chr
3|||Manual
Length = 158
Score = 25.0 bits (52), Expect = 9.5
Identities = 9/16 (56%), Positives = 11/16 (68%)
Frame = +1
Query: 274 AEEIWLPKPVSGSGHH 321
A +IWL PVSG H+
Sbjct: 101 AHQIWLSSPVSGPKHY 116
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,850,000
Number of Sequences: 5004
Number of extensions: 60399
Number of successful extensions: 181
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 173
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 181
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 295793106
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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