Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP07_F_L11
(656 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC2G2.01c |liz1|SPBC4B4.13c|pantothenate transporter |Schizosa... 31 0.19
SPAC31A2.16 |gef2||RhoGEF Gef2|Schizosaccharomyces pombe|chr 1||... 29 0.59
SPAC24B11.10c |chr3|cfh1|chitin synthase regulatory factor Chr3 ... 28 1.0
SPAC18G6.02c |chp1||chromodomain protein Chp1|Schizosaccharomyce... 28 1.0
SPAC4D7.10c |||SAGA complex subunit Spt20 |Schizosaccharomyces p... 28 1.4
SPAC23H3.14 |||LAlv9 family protein|Schizosaccharomyces pombe|ch... 27 1.8
SPAC1006.02 |||WD repeat protein, human GNB1L family|Schizosacch... 26 4.2
SPBC1734.15 |rsc4|brd1|RSC complex subunit Rsc4|Schizosaccharomy... 26 4.2
SPBC649.03 |rhp14||XP-A family homolog Rhp14|Schizosaccharomyces... 26 5.5
SPAC521.04c |||calcium permease |Schizosaccharomyces pombe|chr 1... 26 5.5
SPAPJ760.02c |app1||App1 protein|Schizosaccharomyces pombe|chr 1... 25 7.3
SPBC342.03 |||1,3-beta-glucanosyltransferase |Schizosaccharomyce... 25 7.3
SPBC26H8.12 |||cytochrome c heme lyase|Schizosaccharomyces pombe... 25 7.3
SPCC830.05c |epl1||histone acetyltransferase complex subunit Epl... 25 9.6
SPAC1039.11c ||SPAC922.02c|alpha-glucosidase|Schizosaccharomyces... 25 9.6
>SPBC2G2.01c |liz1|SPBC4B4.13c|pantothenate transporter
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 514
Score = 30.7 bits (66), Expect = 0.19
Identities = 14/51 (27%), Positives = 28/51 (54%)
Frame = +3
Query: 228 MNLLFVLLCLSTIAVRNVRGKSKVRYFPDYFEFGASTASYQVEGAWDEDGK 380
MN+L+ L+ + + AV +VR +R+F E ++ + GAW ++ +
Sbjct: 103 MNILWGLMTIFSFAVHSVRALMILRFFMAVAEASTFAGTHYILGAWYKESE 153
>SPAC31A2.16 |gef2||RhoGEF Gef2|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1101
Score = 29.1 bits (62), Expect = 0.59
Identities = 17/51 (33%), Positives = 30/51 (58%)
Frame = +3
Query: 483 EIMKELGLNFYRFSVSWSRILPSGFANQINQAGIDYYNNLINEMLANNIKP 635
E ++E LN+ ++ R+L F+N+ N + +D Y+NLI +L+ N P
Sbjct: 677 EDLREACLNYL---INIKRLLLCPFSNR-NFSSLDLYSNLIQHLLSANSSP 723
>SPAC24B11.10c |chr3|cfh1|chitin synthase regulatory factor Chr3
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 932
Score = 28.3 bits (60), Expect = 1.0
Identities = 12/33 (36%), Positives = 18/33 (54%)
Frame = +2
Query: 92 PAPYPSP*VIRREKAKASVLNTPASFDNTETDP 190
P P+P RR ++ S N+P +DN T+P
Sbjct: 372 PVEVPAPTFDRRNVSRNSNNNSPEGYDNNRTNP 404
>SPAC18G6.02c |chp1||chromodomain protein Chp1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 960
Score = 28.3 bits (60), Expect = 1.0
Identities = 22/64 (34%), Positives = 26/64 (40%)
Frame = -3
Query: 318 NSQGSNAPCSCRGHFVPLSLKDTTTQTTNSLPLSLSFVCDTDLGSVSVLSNDAGVFRTDA 139
NS SN P S H PLSL T + N + SL F T L S + +A T
Sbjct: 254 NSPQSNTPLSTFRHSSPLSLSPVIT-SDNDVANSLFFSNSTPLPSSLKIKKEAPKLETHT 312
Query: 138 FAFS 127
S
Sbjct: 313 ILVS 316
>SPAC4D7.10c |||SAGA complex subunit Spt20 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 473
Score = 27.9 bits (59), Expect = 1.4
Identities = 10/35 (28%), Positives = 20/35 (57%)
Frame = -3
Query: 372 PHPTLLLPDKKPLMRRTRNSQGSNAPCSCRGHFVP 268
P ++ +P KP+ + N+ S +P + G+F+P
Sbjct: 349 PPSSIQIPPPKPMQKFPANAASSESPPNATGNFLP 383
>SPAC23H3.14 |||LAlv9 family protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 469
Score = 27.5 bits (58), Expect = 1.8
Identities = 11/29 (37%), Positives = 17/29 (58%)
Frame = +3
Query: 240 FVLLCLSTIAVRNVRGKSKVRYFPDYFEF 326
F +LCL+TI ++RG FP+ +F
Sbjct: 8 FQVLCLATIGFHHLRGPEIEHLFPESMDF 36
>SPAC1006.02 |||WD repeat protein, human GNB1L
family|Schizosaccharomyces pombe|chr 1|||Manual
Length = 368
Score = 26.2 bits (55), Expect = 4.2
Identities = 15/52 (28%), Positives = 24/52 (46%)
Frame = -1
Query: 215 SALFVTQISDRFPYYQTTQVYSEPMPSPSHAVSLREKGMGQEWIRISDDTQL 60
S LF T D + T ++ + S H + + K GQ+ IRI D ++
Sbjct: 259 SKLFSTGADDCICLHPTPSSIADDLGSLPHPIFRKTKHCGQQNIRIRSDNKI 310
>SPBC1734.15 |rsc4|brd1|RSC complex subunit Rsc4|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 542
Score = 26.2 bits (55), Expect = 4.2
Identities = 12/33 (36%), Positives = 18/33 (54%)
Frame = +3
Query: 300 RYFPDYFEFGASTASYQVEGAWDEDGKSLSIWD 398
RYFPDY++ Y++ + GK LS+ D
Sbjct: 44 RYFPDYYQIIQKPICYKMMRNKAKTGKYLSMGD 76
>SPBC649.03 |rhp14||XP-A family homolog Rhp14|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 289
Score = 25.8 bits (54), Expect = 5.5
Identities = 9/22 (40%), Positives = 15/22 (68%)
Frame = +2
Query: 488 HEGAWSELLSFLRILVEDSAKR 553
H+ WS ++ +LR VE+ AK+
Sbjct: 182 HQQGWSNMMLYLRYQVEEFAKK 203
>SPAC521.04c |||calcium permease |Schizosaccharomyces pombe|chr
1|||Manual
Length = 881
Score = 25.8 bits (54), Expect = 5.5
Identities = 12/29 (41%), Positives = 19/29 (65%)
Frame = -3
Query: 381 SFHPHPTLLLPDKKPLMRRTRNSQGSNAP 295
S PT LP ++PL+ +++NS G +AP
Sbjct: 690 SLEHEPTNELP-QRPLVNQSQNSHGDDAP 717
>SPAPJ760.02c |app1||App1 protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 857
Score = 25.4 bits (53), Expect = 7.3
Identities = 21/67 (31%), Positives = 28/67 (41%)
Frame = +2
Query: 92 PAPYPSP*VIRREKAKASVLNTPASFDNTETDPRSVSQTKLRLRGNEFVVCVVVSFNDSG 271
PAP PS +K V S DN+ D S T+ + V V S++D+G
Sbjct: 171 PAPAPSTKTPLANISKPVVQAQKDSKDNSWDDSSKQSNTQTANTTSNLRVPVNASWSDAG 230
Query: 272 TKCPRQE 292
K QE
Sbjct: 231 RKEKSQE 237
>SPBC342.03 |||1,3-beta-glucanosyltransferase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 456
Score = 25.4 bits (53), Expect = 7.3
Identities = 14/38 (36%), Positives = 21/38 (55%)
Frame = +3
Query: 471 KRDVEIMKELGLNFYRFSVSWSRILPSGFANQINQAGI 584
K+DVEI K+LG+N R + N +++AGI
Sbjct: 69 KKDVEIFKKLGINTVRVYQVDNSADHDKCMNALSEAGI 106
>SPBC26H8.12 |||cytochrome c heme lyase|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 377
Score = 25.4 bits (53), Expect = 7.3
Identities = 15/34 (44%), Positives = 21/34 (61%), Gaps = 1/34 (2%)
Frame = +2
Query: 428 RKYRRRSG*LIPL-VQTGRGNHEGAWSELLSFLR 526
RK R SG +P+ VQ +EGAWSE+ ++ R
Sbjct: 235 RKGYRDSGENVPIMVQVHNFLNEGAWSEIKAWER 268
>SPCC830.05c |epl1||histone acetyltransferase complex subunit Epl1
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 557
Score = 25.0 bits (52), Expect = 9.6
Identities = 14/36 (38%), Positives = 20/36 (55%)
Frame = -3
Query: 414 TCELLHPISTNSFHPHPTLLLPDKKPLMRRTRNSQG 307
TC+ L S NS + + TLL P + P+ R R +G
Sbjct: 459 TCDSLSFSSNNSLYGYSTLLHP-RNPICVRQRIGRG 493
>SPAC1039.11c ||SPAC922.02c|alpha-glucosidase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 995
Score = 25.0 bits (52), Expect = 9.6
Identities = 13/43 (30%), Positives = 18/43 (41%)
Frame = -3
Query: 282 GHFVPLSLKDTTTQTTNSLPLSLSFVCDTDLGSVSVLSNDAGV 154
G+ +P+ TT T P L D+D + L D GV
Sbjct: 860 GNIIPMQKPSLTTHETKQNPYDLLVALDSDRKACGSLYVDDGV 902
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,888,535
Number of Sequences: 5004
Number of extensions: 62959
Number of successful extensions: 178
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 176
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 178
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 297805304
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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