Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP07_F_L11
         (656 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF099915-3|AAC68766.1|  475|Caenorhabditis elegans Hypothetical ...   110   1e-24
U41557-9|AAA83309.1|  479|Caenorhabditis elegans Hypothetical pr...   104   5e-23
Z78417-4|CAB01685.2|  531|Caenorhabditis elegans Hypothetical pr...    31   0.72 
AC084159-2|AAK39359.1|  659|Caenorhabditis elegans Hypothetical ...    30   1.3  
Z70783-3|CAA94853.4|  755|Caenorhabditis elegans Hypothetical pr...    27   8.9  
AC006742-7|ABB51176.1| 1434|Caenorhabditis elegans Ferm domain (...    27   8.9  
AC006742-1|AAF60499.2| 1393|Caenorhabditis elegans Hypothetical ...    27   8.9  

>AF099915-3|AAC68766.1|  475|Caenorhabditis elegans Hypothetical
           protein E02H9.5 protein.
          Length = 475

 Score =  110 bits (264), Expect = 1e-24
 Identities = 52/119 (43%), Positives = 76/119 (63%), Gaps = 2/119 (1%)
 Frame = +3

Query: 306 FPDYFEFGASTASYQVEGAWDEDGKSLSIWDVAAHMSP--IKDGSTGDVAADSYHLYKRD 479
           FP  F+   +TA+YQ+EGA D +G+  S WD A  + P  I D S  D++ D    YK D
Sbjct: 7   FPKNFKLATATAAYQIEGAKDLNGRGFSTWD-AIRLEPGRILDNSDPDLSCDGLLKYKED 65

Query: 480 VEIMKELGLNFYRFSVSWSRILPSGFANQINQAGIDYYNNLINEMLANNIKPFLTIYHW 656
           V ++ E+G+  YRFS+SWSRILP G  + IN+ GI +Y +L   +  NNI+P +T++H+
Sbjct: 66  VALLAEIGVTNYRFSISWSRILPDGTLSTINEEGIKFYRDLCLLLKENNIEPVVTLFHF 124


>U41557-9|AAA83309.1|  479|Caenorhabditis elegans Hypothetical
           protein C50F7.10 protein.
          Length = 479

 Score =  104 bits (250), Expect = 5e-23
 Identities = 46/118 (38%), Positives = 73/118 (61%), Gaps = 1/118 (0%)
 Frame = +3

Query: 306 FPDYFEFGASTASYQVEGAWDEDGKSLSIWD-VAAHMSPIKDGSTGDVAADSYHLYKRDV 482
           FP  F+   +TA+YQ+EGA + DG+  S WD + +    I D S  D++ +    YK DV
Sbjct: 7   FPKNFQLATATAAYQIEGAKNLDGRGFSTWDSIRSENGRIHDNSDPDLSCEGRLKYKEDV 66

Query: 483 EIMKELGLNFYRFSVSWSRILPSGFANQINQAGIDYYNNLINEMLANNIKPFLTIYHW 656
            ++ ++G+  YRFS+SWSRILP G    IN+ GI +Y ++   +  N I+P +T++H+
Sbjct: 67  ALLSKIGVTSYRFSISWSRILPDGTLKTINEDGIQFYRDICLLLRDNGIEPIVTLFHF 124


>Z78417-4|CAB01685.2|  531|Caenorhabditis elegans Hypothetical
           protein C35C5.5 protein.
          Length = 531

 Score = 31.1 bits (67), Expect = 0.72
 Identities = 20/73 (27%), Positives = 31/73 (42%)
 Frame = +3

Query: 315 YFEFGASTASYQVEGAWDEDGKSLSIWDVAAHMSPIKDGSTGDVAADSYHLYKRDVEIMK 494
           YF +   T   +  G W  DG++L ++ +   +  I      D   +   LY     + K
Sbjct: 159 YFPYDWQTCEMKF-GGWSNDGETLDLYQIPVDVDDIPQVKRQDDGVE--FLY-----LEK 210

Query: 495 ELGLNFYRFSVSW 533
            LGL+FY  S  W
Sbjct: 211 GLGLSFYHESAEW 223


>AC084159-2|AAK39359.1|  659|Caenorhabditis elegans Hypothetical
           protein Y73B3A.1 protein.
          Length = 659

 Score = 30.3 bits (65), Expect = 1.3
 Identities = 19/45 (42%), Positives = 28/45 (62%)
 Frame = +2

Query: 86  SIPAPYPSP*VIRREKAKASVLNTPASFDNTETDPRSVSQTKLRL 220
           SIPAP PSP   RR  ++ +  +T +SF  T T+P + +Q K R+
Sbjct: 362 SIPAPAPSPPASRRSVSRTTQPST-SSF-ATPTEPPAKNQRKRRV 404


>Z70783-3|CAA94853.4|  755|Caenorhabditis elegans Hypothetical
           protein ZK856.5 protein.
          Length = 755

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 21/65 (32%), Positives = 31/65 (47%), Gaps = 4/65 (6%)
 Frame = -1

Query: 416 RHVSCYIPYRQ--TLSILIP--RSFYLIRSR*CAELEIVREVTHLALAADISYRYR*KTQ 249
           R+ SC   Y +  T S+ IP    F +I +     L   + V H  L +DI  RY+  T 
Sbjct: 426 RYYSCLSKYTKSATRSLNIPLFSLFAIIYTELFLFLSFSKWVLHFQLFSDIHTRYKNSTY 485

Query: 248 QHKQQ 234
           QH ++
Sbjct: 486 QHPKK 490


>AC006742-7|ABB51176.1| 1434|Caenorhabditis elegans Ferm domain
           (protein4.1-ezrin-radixin-moesin) family protein 5
           protein.
          Length = 1434

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 10/22 (45%), Positives = 16/22 (72%)
 Frame = +3

Query: 258 STIAVRNVRGKSKVRYFPDYFE 323
           S  +VR++RGK K R  P++F+
Sbjct: 520 SVTSVRSMRGKRKTRAIPEFFD 541


>AC006742-1|AAF60499.2| 1393|Caenorhabditis elegans Hypothetical
           protein Y38C1AB.4 protein.
          Length = 1393

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 10/22 (45%), Positives = 16/22 (72%)
 Frame = +3

Query: 258 STIAVRNVRGKSKVRYFPDYFE 323
           S  +VR++RGK K R  P++F+
Sbjct: 479 SVTSVRSMRGKRKTRAIPEFFD 500


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,864,855
Number of Sequences: 27780
Number of extensions: 355205
Number of successful extensions: 886
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 868
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 883
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1465835342
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)