Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP07_F_L09
         (650 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC227.13c |isu1||mitochondrial iron-sulfur cluster assembly sc...   144   1e-35
SPBC3B8.04c |||membrane transporter|Schizosaccharomyces pombe|ch...    29   0.77 
SPBC16H5.13 |||WD repeat protein |Schizosaccharomyces pombe|chr ...    28   1.3  
SPBC14C8.03 |fma2||methionine aminopeptidase Fma2 |Schizosacchar...    27   1.8  
SPBC211.03c |||guanyl-nucleotide exchange factor|Schizosaccharom...    27   2.3  
SPAC7D4.02c |||src |Schizosaccharomyces pombe|chr 1|||Manual           26   5.4  

>SPAC227.13c |isu1||mitochondrial iron-sulfur cluster assembly
           scaffold protein Isu1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 192

 Score =  144 bits (349), Expect = 1e-35
 Identities = 69/95 (72%), Positives = 79/95 (83%)
 Frame = +3

Query: 243 GAPACGDVMKLQIKVDENGKIVDAKFKTFGCGSAIASSSLATEWVKGKTVDEALKLKNTD 422
           GAPACGDVM+L I+V+++G I D KFKTFGCGSAIASSS  T  VKG T++EA K+KNT 
Sbjct: 84  GAPACGDVMRLAIRVNKDGVIEDVKFKTFGCGSAIASSSYVTTMVKGMTLEEASKIKNTQ 143

Query: 423 IAKELSLPPVKLHCSMLAEDAIKAALSDYRIKQQT 527
           IAKEL LPPVKLHCSMLAEDAIK+A+  YR KQ T
Sbjct: 144 IAKELCLPPVKLHCSMLAEDAIKSAVKHYRSKQLT 178



 Score = 49.6 bits (113), Expect = 4e-07
 Identities = 20/29 (68%), Positives = 23/29 (79%)
 Frame = +2

Query: 152 YHANVIDHYENPRNVGSLDKKDKNVGTGL 238
           YH NV+DHY NPRNVG+L K D +VG GL
Sbjct: 54  YHKNVLDHYNNPRNVGTLPKGDPDVGIGL 82


>SPBC3B8.04c |||membrane transporter|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 867

 Score = 28.7 bits (61), Expect = 0.77
 Identities = 16/43 (37%), Positives = 24/43 (55%), Gaps = 1/43 (2%)
 Frame = -2

Query: 433 SLAISVFFN-FSASSTVFPLTHSVARELEAIAEPHPKVLNLAS 308
           +L +S F +   A+  V P+ H V   L   A+PHP++  LAS
Sbjct: 763 TLVVSSFISHIVAAMVVLPIVHEVGSRL---ADPHPRLFVLAS 802


>SPBC16H5.13 |||WD repeat protein |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 1026

 Score = 27.9 bits (59), Expect = 1.3
 Identities = 15/48 (31%), Positives = 25/48 (52%)
 Frame = -2

Query: 421 SVFFNFSASSTVFPLTHSVARELEAIAEPHPKVLNLASTIFPFSSTLI 278
           SVF     ++ +F L+ S   +L    EPH ++++  S  FP+ S  I
Sbjct: 245 SVFVLADGTACIFTLSSSTLLKLHQSPEPHFELISKYSGDFPWKSCTI 292


>SPBC14C8.03 |fma2||methionine aminopeptidase Fma2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 426

 Score = 27.5 bits (58), Expect = 1.8
 Identities = 12/20 (60%), Positives = 15/20 (75%)
 Frame = +3

Query: 261 DVMKLQIKVDENGKIVDAKF 320
           DVMK+ I V  NG+IVD+ F
Sbjct: 194 DVMKVDIGVHVNGRIVDSAF 213


>SPBC211.03c |||guanyl-nucleotide exchange
           factor|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1462

 Score = 27.1 bits (57), Expect = 2.3
 Identities = 15/37 (40%), Positives = 22/37 (59%)
 Frame = +3

Query: 300 KIVDAKFKTFGCGSAIASSSLATEWVKGKTVDEALKL 410
           K V  +F T G  S I ++ ++    KGK +DEAL+L
Sbjct: 597 KRVLGEFLTKGSNSHILNAFISAFDFKGKRIDEALRL 633


>SPAC7D4.02c |||src |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 415

 Score = 25.8 bits (54), Expect = 5.4
 Identities = 9/26 (34%), Positives = 16/26 (61%), Gaps = 2/26 (7%)
 Frame = -2

Query: 175 MVNDVC--MIRCRKNHIRTSKAFKTH 104
           +   VC  +++C K H+  S+ F+TH
Sbjct: 58  LTKQVCVELMQCNKKHLEASRYFQTH 83


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,575,973
Number of Sequences: 5004
Number of extensions: 51381
Number of successful extensions: 140
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 136
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 140
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 293780908
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)