Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP07_F_L09
         (650 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL021492-2|CAA16379.1|  153|Caenorhabditis elegans Hypothetical ...   165   2e-41
Z70686-10|CAD21656.1|  533|Caenorhabditis elegans Hypothetical p...    28   5.0  
Z70683-8|CAD21626.1|  533|Caenorhabditis elegans Hypothetical pr...    28   5.0  
AF548287-1|AAN40683.1| 2238|Caenorhabditis elegans poly ADP-ribo...    28   6.6  
AF047664-2|AAC04454.2| 2276|Caenorhabditis elegans Poly(adp-ribo...    28   6.6  
AF047664-1|AAO12392.1| 2238|Caenorhabditis elegans Poly(adp-ribo...    28   6.6  
U66261-1|AAB07022.1| 1525|Caenorhabditis elegans multidrug resis...    27   8.7  
U41554-4|AAA83299.2| 1525|Caenorhabditis elegans Multidrug resis...    27   8.7  

>AL021492-2|CAA16379.1|  153|Caenorhabditis elegans Hypothetical
           protein Y45F10D.4 protein.
          Length = 153

 Score =  165 bits (401), Expect = 2e-41
 Identities = 75/93 (80%), Positives = 86/93 (92%)
 Frame = +3

Query: 243 GAPACGDVMKLQIKVDENGKIVDAKFKTFGCGSAIASSSLATEWVKGKTVDEALKLKNTD 422
           GAPACGDVMKLQI+VD+NGKI++AKFKTFGCGSAIASSSLATEW+ GKT+D A K+KN +
Sbjct: 57  GAPACGDVMKLQIRVDDNGKIIEAKFKTFGCGSAIASSSLATEWINGKTIDYASKIKNDE 116

Query: 423 IAKELSLPPVKLHCSMLAEDAIKAALSDYRIKQ 521
           IAKEL LPPVKLHCSMLA+DAI+AAL DY+ KQ
Sbjct: 117 IAKELCLPPVKLHCSMLAQDAIQAALKDYQKKQ 149



 Score = 60.5 bits (140), Expect = 1e-09
 Identities = 27/43 (62%), Positives = 29/43 (67%)
 Frame = +2

Query: 110 LKGFGSPNVILAAPYHANVIDHYENPRNVGSLDKKDKNVGTGL 238
           L  F  P     A YH  VIDHYENPRNVGSLDK D +VGTG+
Sbjct: 13  LHKFALPAATSVAQYHEKVIDHYENPRNVGSLDKNDPSVGTGI 55


>Z70686-10|CAD21656.1|  533|Caenorhabditis elegans Hypothetical
           protein F13B12.6 protein.
          Length = 533

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 15/41 (36%), Positives = 24/41 (58%)
 Frame = +3

Query: 378 KGKTVDEALKLKNTDIAKELSLPPVKLHCSMLAEDAIKAAL 500
           K KT+DE L+ +N + A  L++  ++   S   EDA+ A L
Sbjct: 83  KDKTIDEILEEENREKAHALAMRELRAGASDSDEDALMAQL 123


>Z70683-8|CAD21626.1|  533|Caenorhabditis elegans Hypothetical
           protein F13B12.6 protein.
          Length = 533

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 15/41 (36%), Positives = 24/41 (58%)
 Frame = +3

Query: 378 KGKTVDEALKLKNTDIAKELSLPPVKLHCSMLAEDAIKAAL 500
           K KT+DE L+ +N + A  L++  ++   S   EDA+ A L
Sbjct: 83  KDKTIDEILEEENREKAHALAMRELRAGASDSDEDALMAQL 123


>AF548287-1|AAN40683.1| 2238|Caenorhabditis elegans poly ADP-ribose
           metabolism enzyme-5 protein.
          Length = 2238

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 11/31 (35%), Positives = 20/31 (64%)
 Frame = +3

Query: 399 ALKLKNTDIAKELSLPPVKLHCSMLAEDAIK 491
           A+++ + D+A  L+  PVK+HC+ L    +K
Sbjct: 294 AVRMGHRDLASALAQGPVKMHCNDLHRATLK 324


>AF047664-2|AAC04454.2| 2276|Caenorhabditis elegans Poly(adp-ribose)
           metabolism enzymeprotein 5, isoform a protein.
          Length = 2276

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 11/31 (35%), Positives = 20/31 (64%)
 Frame = +3

Query: 399 ALKLKNTDIAKELSLPPVKLHCSMLAEDAIK 491
           A+++ + D+A  L+  PVK+HC+ L    +K
Sbjct: 294 AVRMGHRDLASALAQGPVKMHCNDLHRATLK 324


>AF047664-1|AAO12392.1| 2238|Caenorhabditis elegans Poly(adp-ribose)
           metabolism enzymeprotein 5, isoform b protein.
          Length = 2238

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 11/31 (35%), Positives = 20/31 (64%)
 Frame = +3

Query: 399 ALKLKNTDIAKELSLPPVKLHCSMLAEDAIK 491
           A+++ + D+A  L+  PVK+HC+ L    +K
Sbjct: 294 AVRMGHRDLASALAQGPVKMHCNDLHRATLK 324


>U66261-1|AAB07022.1| 1525|Caenorhabditis elegans multidrug resistance
            related protein2 protein.
          Length = 1525

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 14/60 (23%), Positives = 32/60 (53%), Gaps = 1/60 (1%)
 Frame = -2

Query: 379  LTHSVARELEAIAEPHPKVL-NLASTIFPFSSTLICNFITSPHAGAPXEACTYIFIFLIQ 203
            + + + +++EAI    P V+ +++ TIF   +TL+     +P AG      + I+  +++
Sbjct: 1065 ILNRIGKDIEAIDRTLPDVIRHMSMTIFNVVATLVVIMWATPWAGIAFAILSVIYFIVLR 1124


>U41554-4|AAA83299.2| 1525|Caenorhabditis elegans Multidrug resistance
            protein familyprotein 2 protein.
          Length = 1525

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 14/60 (23%), Positives = 32/60 (53%), Gaps = 1/60 (1%)
 Frame = -2

Query: 379  LTHSVARELEAIAEPHPKVL-NLASTIFPFSSTLICNFITSPHAGAPXEACTYIFIFLIQ 203
            + + + +++EAI    P V+ +++ TIF   +TL+     +P AG      + I+  +++
Sbjct: 1065 ILNRIGKDIEAIDRTLPDVIRHMSMTIFNVVATLVVIMWATPWAGIAFAILSVIYFIVLR 1124


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,189,842
Number of Sequences: 27780
Number of extensions: 287146
Number of successful extensions: 677
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 657
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 677
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1444744186
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)