Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP07_F_L08
         (651 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC337.12 |||human ZC3H3 homolog|Schizosaccharomyces pombe|chr ...    26   5.4  
SPCC737.05 |||peroxin Pex28/29|Schizosaccharomyces pombe|chr 3||...    25   7.2  
SPCC132.02 |hst2||Sir2 family histone deacetylase Hst2|Schizosac...    25   7.2  

>SPBC337.12 |||human ZC3H3 homolog|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 377

 Score = 25.8 bits (54), Expect = 5.4
 Identities = 12/35 (34%), Positives = 19/35 (54%)
 Frame = +1

Query: 508 SKYFEFHNGDTRPPTHLTWHNKKYELXLNWFDENV 612
           +K+ EF +   + P +L W+NK Y L    F + V
Sbjct: 166 TKWLEFVSAKGQCPKYLYWNNKSYLLKKKRFLKEV 200


>SPCC737.05 |||peroxin Pex28/29|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 264

 Score = 25.4 bits (53), Expect = 7.2
 Identities = 13/30 (43%), Positives = 18/30 (60%), Gaps = 3/30 (10%)
 Frame = -2

Query: 506 NSIASLDLINPTPPNFS---SATWYTLPVN 426
           NS+ SLDL+ P P N+S    + W  +P N
Sbjct: 209 NSVTSLDLVEP-PENYSWAPQSDWTFVPPN 237


>SPCC132.02 |hst2||Sir2 family histone deacetylase
           Hst2|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 332

 Score = 25.4 bits (53), Expect = 7.2
 Identities = 10/25 (40%), Positives = 14/25 (56%)
 Frame = -3

Query: 244 YLPVLFSLIRLKKNSRNFFSLKHEV 170
           Y   +F L   +KN R F+ L HE+
Sbjct: 65  YAEAVFDLSYFRKNPRPFYELAHEL 89


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,524,124
Number of Sequences: 5004
Number of extensions: 49789
Number of successful extensions: 100
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 99
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 100
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 293780908
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)