Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP07_F_L03
(581 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC3E7.08c |rad13||DNA repair nuclease Rad13|Schizosaccharomyce... 126 3e-30
SPBC29A10.05 |exo1|mut2|exonuclease I Exo1|Schizosaccharomyces p... 52 5e-08
SPAC3G6.06c |rad2|fen1|FEN-1 endonuclease|Schizosaccharomyces po... 51 1e-07
SPBC24C6.02 |||ATP-dependent RNA helicase Spb4 |Schizosaccharomy... 36 0.004
SPBC21B10.12 |rec6||meiotic recombination protein Rec6|Schizosac... 29 0.37
SPBC1604.10 |srb7|med21|mediator complex subunit Srb7 |Schizosac... 29 0.50
SPCC1827.07c ||SPCP1E11.01c|SPX/EXS domain protein|Schizosacchar... 29 0.65
SPAC22F3.06c |lon1||Lon protease homolog Lon1|Schizosaccharomyce... 27 1.5
SPAC1002.14 |itt1||ubiquitin-protein ligase E3 |Schizosaccharomy... 27 2.0
SPACUNK4.14 |mdb1||BRCT domain protein|Schizosaccharomyces pombe... 26 3.5
SPCC1795.08c |||histone acetyltransferase complex subunit |Schiz... 26 4.6
SPAPYUK71.03c |||C2 domain protein|Schizosaccharomyces pombe|chr... 25 6.1
SPAC19G12.02c |pms1||MutL family mismatch-repair protein Pms1|Sc... 25 6.1
SPAC20H4.09 |||ATP-dependent RNA helicase, spliceosomal |Schizos... 25 6.1
SPCC962.05 |||sequence orphan|Schizosaccharomyces pombe|chr 3|||... 25 6.1
SPAC17A2.10c |||sequence orphan|Schizosaccharomyces pombe|chr 1|... 25 8.1
SPCC1827.03c |||acetyl-CoA ligase |Schizosaccharomyces pombe|chr... 25 8.1
SPBC21C3.01c |vps13a|vps1301, SPBC31F10.18c|chorein homolog|Schi... 25 8.1
SPCC126.02c |pku70||Ku domain protein Pku70|Schizosaccharomyces ... 25 8.1
>SPBC3E7.08c |rad13||DNA repair nuclease Rad13|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1112
Score = 126 bits (303), Expect = 3e-30
Identities = 60/140 (42%), Positives = 93/140 (66%), Gaps = 1/140 (0%)
Frame = +1
Query: 19 MGVTGLWRLIEPTGKPVPVETLENKVLAVDISIWLHQMVKGYQDAKGAPLXNAHLMGLFQ 198
MGV+GLW ++EP +PV +ETL NK LA+D SIW++Q +K +D +G L ++H++G F+
Sbjct: 1 MGVSGLWDILEPVKRPVKLETLVNKRLAIDASIWIYQFLKAVRDKEGNQLKSSHVVGFFR 60
Query: 199 RLCKLLYFRIKPIFVFDGGFPDLKKETISKRQDHKV-KYNSESERIKRELALLLSKKTAI 375
R+CKLL+F IKP+FVFDGG P LK++TI KRQ ++ + + + + LAL + + +
Sbjct: 61 RICKLLFFGIKPVFVFDGGAPSLKRQTIQKRQARRLDREENATVTANKLLALQMRHQAML 120
Query: 376 NSLLGKQISPKKNVAQTENE 435
K+ + N A +NE
Sbjct: 121 LEENNKKATALAN-ASVQNE 139
>SPBC29A10.05 |exo1|mut2|exonuclease I Exo1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 571
Score = 52.4 bits (120), Expect = 5e-08
Identities = 31/96 (32%), Positives = 46/96 (47%), Gaps = 1/96 (1%)
Frame = +1
Query: 19 MGVTGLWRLIEPTGKPVPVETLENKVLAVDISIWLHQMV-KGYQDAKGAPLXNAHLMGLF 195
MG+ GL L++P K VE K L VD +WLH+ V + + +L
Sbjct: 1 MGIKGLLGLLKPMQKSSHVEEFSGKTLGVDGYVWLHKAVFTCAHELAFNKETDKYLKYAI 60
Query: 196 QRLCKLLYFRIKPIFVFDGGFPDLKKETISKRQDHK 303
+ L Y+ +KP+ VFDGG K T KR++ +
Sbjct: 61 HQALMLQYYGVKPLIVFDGGPLPCKASTEQKRKERR 96
>SPAC3G6.06c |rad2|fen1|FEN-1 endonuclease|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 380
Score = 51.2 bits (117), Expect = 1e-07
Identities = 37/116 (31%), Positives = 58/116 (50%), Gaps = 10/116 (8%)
Frame = +1
Query: 19 MGVTGLWRLI-EPTGKPVPVETLEN---KVLAVDISIWLHQMVKGYQDAKGAPLXN---- 174
MG+ GL +++ E V ++N + +A+D S+ L+Q + + G L N
Sbjct: 1 MGIKGLAQVLSEHAPASVKHNDIKNYFGRKVAIDASMSLYQFLIQVRSQDGQQLMNEQGE 60
Query: 175 --AHLMGLFQRLCKLLYFRIKPIFVFDGGFPDLKKETISKRQDHKVKYNSESERIK 336
+HLMG+F R +++ IKP FVFDG P LK ++KR K + E K
Sbjct: 61 TTSHLMGMFYRTLRIVDNGIKPCFVFDGKPPTLKSGELAKRVARHQKAREDQEETK 116
>SPBC24C6.02 |||ATP-dependent RNA helicase Spb4 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 606
Score = 35.9 bits (79), Expect = 0.004
Identities = 19/60 (31%), Positives = 34/60 (56%)
Frame = +1
Query: 265 LKKETISKRQDHKVKYNSESERIKRELALLLSKKTAINSLLGKQISPKKNVAQTENEDNI 444
+K E SK+++ K K N+ E+ K + L ++K ++ L ++I K +TEN+D I
Sbjct: 514 IKNEAWSKQKEVKEKRNTRREKRKSKKEFLKAQKNEASNNLKQEIVSKAGAQETENDDLI 573
>SPBC21B10.12 |rec6||meiotic recombination protein
Rec6|Schizosaccharomyces pombe|chr 2|||Manual
Length = 182
Score = 29.5 bits (63), Expect = 0.37
Identities = 20/54 (37%), Positives = 27/54 (50%), Gaps = 4/54 (7%)
Frame = +1
Query: 175 AHLMGLFQRLCKLLYFRIKPIFVFDG--GFPDLK--KETISKRQDHKVKYNSES 324
+H L + CKL+Y R FDG FPDL+ K+ + D + K SES
Sbjct: 70 SHFQLLMYKKCKLIYTRTLRKNEFDGIHKFPDLEDSKQKLQVADDEENKQYSES 123
>SPBC1604.10 |srb7|med21|mediator complex subunit Srb7
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 138
Score = 29.1 bits (62), Expect = 0.50
Identities = 15/45 (33%), Positives = 25/45 (55%)
Frame = +1
Query: 367 TAINSLLGKQISPKKNVAQTENEDNIFKLPELPKKNQESESEYVK 501
T IN L G +PK + + + N + +L +K+ ESE+E +K
Sbjct: 74 TLINQLPGISTAPKHQLEKIKKLQNSIEEKQLERKSLESENEDLK 118
>SPCC1827.07c ||SPCP1E11.01c|SPX/EXS domain
protein|Schizosaccharomyces pombe|chr 3|||Manual
Length = 682
Score = 28.7 bits (61), Expect = 0.65
Identities = 19/52 (36%), Positives = 28/52 (53%)
Frame = +1
Query: 289 RQDHKVKYNSESERIKRELALLLSKKTAINSLLGKQISPKKNVAQTENEDNI 444
R +H+ YN E+ R REL L K + + QIS KN T++ED++
Sbjct: 621 RVEHEEIYNRENLRAARELKPLDFVKPHSDVFVSHQISSDKN--YTDDEDSM 670
>SPAC22F3.06c |lon1||Lon protease homolog Lon1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1067
Score = 27.5 bits (58), Expect = 1.5
Identities = 18/71 (25%), Positives = 35/71 (49%), Gaps = 2/71 (2%)
Frame = +1
Query: 265 LKKETISKRQDHKVKYNSESERIKRELALLLSKK-TAINSLLGKQISPKKN-VAQTENED 438
LKKE ++ + HK+ E + +R LL+++ I LG+++ K+ V + +
Sbjct: 421 LKKELLNAQLQHKINKEIEQKITQRHKEYLLTEQLKQIKRELGQELDSKEALVTEFKKRT 480
Query: 439 NIFKLPELPKK 471
+P+ KK
Sbjct: 481 ESLSMPDHVKK 491
>SPAC1002.14 |itt1||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 435
Score = 27.1 bits (57), Expect = 2.0
Identities = 12/29 (41%), Positives = 18/29 (62%)
Frame = +1
Query: 220 FRIKPIFVFDGGFPDLKKETISKRQDHKV 306
F + VF GGF DLKKE ++ ++ K+
Sbjct: 136 FHLPTEMVFPGGFDDLKKEILAFDKNAKL 164
>SPACUNK4.14 |mdb1||BRCT domain protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 520
Score = 26.2 bits (55), Expect = 3.5
Identities = 21/83 (25%), Positives = 36/83 (43%), Gaps = 3/83 (3%)
Frame = +1
Query: 253 GFPDLKKETISKRQDHKVKYNSESERIKRELALLLSKKTAINSLLGKQISPKKNVAQT-- 426
G P LK + R+ + NS E+ + NS+ +++P+ T
Sbjct: 159 GDPSLKPAEVFDRKQ-SAEINSPIEKDVNPQQNISDSSIKNNSIHSDEVNPEVRPDLTPS 217
Query: 427 -ENEDNIFKLPELPKKNQESESE 492
ENE++ PE+ K +ES S+
Sbjct: 218 NENEESKRSAPEIALKEKESTSQ 240
>SPCC1795.08c |||histone acetyltransferase complex subunit
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 985
Score = 25.8 bits (54), Expect = 4.6
Identities = 20/85 (23%), Positives = 39/85 (45%), Gaps = 4/85 (4%)
Frame = +1
Query: 259 PDLKKETISKRQDHKVKYNSESERIKRELALLLSKKTAINSLLGKQI----SPKKNVAQT 426
P + ET + ++ K +SE R+L L+ K++ + KQ+ + +K +
Sbjct: 167 PVKEVETTAHAEEEKGPLTPDSEYAARQLTEELANKSSQEEGVDKQLRVVEATEKEHEED 226
Query: 427 ENEDNIFKLPELPKKNQESESEYVK 501
NE+N+ + + ES+ VK
Sbjct: 227 GNEENVTVTKPVEVATDQVESKEVK 251
>SPAPYUK71.03c |||C2 domain protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1225
Score = 25.4 bits (53), Expect = 6.1
Identities = 15/60 (25%), Positives = 27/60 (45%)
Frame = +1
Query: 232 PIFVFDGGFPDLKKETISKRQDHKVKYNSESERIKRELALLLSKKTAINSLLGKQISPKK 411
P F +P +++T+ N S+ RE+A + K A++ +GK I+ K
Sbjct: 274 PRMGFIRSYPKTEEDTVMMDLRLAFSPNDISDLTGREIAACIKPKIALDLKIGKSIASAK 333
>SPAC19G12.02c |pms1||MutL family mismatch-repair protein
Pms1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 794
Score = 25.4 bits (53), Expect = 6.1
Identities = 14/60 (23%), Positives = 30/60 (50%), Gaps = 1/60 (1%)
Frame = +1
Query: 265 LKKETISKRQDHKVKYNSESERIKRELALLLSK-KTAINSLLGKQISPKKNVAQTENEDN 441
L+K+++ + K + SER+K++LAL S T++ + K+ + + + N
Sbjct: 423 LQKDSMRRSSPLNEKVTASSERMKKKLALFASSTDTSMQKTIDSSFPLKQPINKPSSNPN 482
>SPAC20H4.09 |||ATP-dependent RNA helicase, spliceosomal
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 647
Score = 25.4 bits (53), Expect = 6.1
Identities = 11/23 (47%), Positives = 12/23 (52%)
Frame = +3
Query: 126 PDGERLPRCQRSPFXKCSLDGLV 194
P +RLP S KC LDG V
Sbjct: 556 PTAQRLPSSDCSKILKCLLDGFV 578
>SPCC962.05 |||sequence orphan|Schizosaccharomyces pombe|chr
3|||Manual
Length = 536
Score = 25.4 bits (53), Expect = 6.1
Identities = 11/17 (64%), Positives = 12/17 (70%)
Frame = +1
Query: 19 MGVTGLWRLIEPTGKPV 69
MGV L R +EP GKPV
Sbjct: 1 MGVPRLGRFLEPFGKPV 17
>SPAC17A2.10c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 230
Score = 25.0 bits (52), Expect = 8.1
Identities = 14/40 (35%), Positives = 21/40 (52%)
Frame = -1
Query: 509 LFHFTYSDSLSWFFFGSSGNLNILSSFSV*ATFFFGEICL 390
LF ++S S S+ FF S + SSF + FF +C+
Sbjct: 124 LFFLSFSFSFSFLFFLSQIFIVYFSSFPILHFLFFFFLCV 163
>SPCC1827.03c |||acetyl-CoA ligase |Schizosaccharomyces pombe|chr
3|||Manual
Length = 512
Score = 25.0 bits (52), Expect = 8.1
Identities = 11/32 (34%), Positives = 19/32 (59%)
Frame = +1
Query: 364 KTAINSLLGKQISPKKNVAQTENEDNIFKLPE 459
+ AIN + GK ++PK+ E + FK+P+
Sbjct: 448 QAAINPVAGKTVTPKQLHDYLEQKVAAFKIPK 479
>SPBC21C3.01c |vps13a|vps1301, SPBC31F10.18c|chorein
homolog|Schizosaccharomyces pombe|chr 2|||Manual
Length = 3071
Score = 25.0 bits (52), Expect = 8.1
Identities = 21/74 (28%), Positives = 35/74 (47%), Gaps = 2/74 (2%)
Frame = +1
Query: 322 SERIKRELALLLSKKTAINSLLGKQISPKKNVAQTENEDNIFKLPELPKKNQESESEYVK 501
SE ++REL + + K PKK V +T + F LPE+ + N ++ ++
Sbjct: 1323 SENLRRELDKAFDR----SGTAAKLKHPKKTVVETLDILTTFNLPEI-RLNVHTDDFWIH 1377
Query: 502 *NN--QLHCYISNF 537
+ QLH +S F
Sbjct: 1378 GGDLTQLHSILSFF 1391
>SPCC126.02c |pku70||Ku domain protein Pku70|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 607
Score = 25.0 bits (52), Expect = 8.1
Identities = 10/21 (47%), Positives = 14/21 (66%)
Frame = -3
Query: 237 NWFYPEVEKFAKPLEQAHQVS 175
NW Y + E+FA + Q+ QVS
Sbjct: 266 NWVYAKGERFAVAVPQSKQVS 286
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,421,540
Number of Sequences: 5004
Number of extensions: 50497
Number of successful extensions: 167
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 160
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 166
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 250133048
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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