Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP07_F_L01
         (502 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z73426-1|CAA97792.1|  155|Caenorhabditis elegans Hypothetical pr...   156   7e-39
Z69361-2|CAA93288.1| 2165|Caenorhabditis elegans Hypothetical pr...    28   3.3  
Z69360-10|CAA93287.1| 2165|Caenorhabditis elegans Hypothetical p...    28   3.3  
Z83237-1|CAB05786.2|  423|Caenorhabditis elegans Hypothetical pr...    27   5.8  
Z69883-3|CAA93741.2|  450|Caenorhabditis elegans Hypothetical pr...    27   5.8  
U23168-3|AAU87831.1| 4034|Caenorhabditis elegans Temporarily ass...    27   7.6  
U23168-1|AAU87832.1| 7548|Caenorhabditis elegans Temporarily ass...    27   7.6  

>Z73426-1|CAA97792.1|  155|Caenorhabditis elegans Hypothetical
           protein F40F11.1 protein.
          Length = 155

 Score =  156 bits (379), Expect = 7e-39
 Identities = 73/115 (63%), Positives = 88/115 (76%), Gaps = 3/115 (2%)
 Frame = +3

Query: 24  MADQTEKAFQKQATVFLNRKGGM---KRKDMRHHKNVGLGFKTPREAIEGTYIDKKCPFT 194
           M++QTE+AF KQ TV LN K  +    +K  R+ + VGLGFK PR+A+EGTYIDKKCP+ 
Sbjct: 1   MSEQTERAFLKQPTVNLNNKARILAGSKKTPRYIREVGLGFKAPRDAVEGTYIDKKCPWA 60

Query: 195 GNVSIRGRILTGVVQKMKMQRTIVIRRDYLHYLPKYNRFEKRHRNMSVHLSPCFR 359
           GNV IRG ILTGVV K KM RTIV+RRDYLHY+ KY R+EKRH+N+  H SP FR
Sbjct: 61  GNVPIRGMILTGVVLKNKMTRTIVVRRDYLHYIKKYRRYEKRHKNVPAHCSPAFR 115



 Score = 52.8 bits (121), Expect = 1e-07
 Identities = 25/36 (69%), Positives = 27/36 (75%)
 Frame = +1

Query: 334 PYICRLASGXVEIGDIVTIGECRPLSKTVRFNVLKV 441
           P  C  A   +  GD+VTIGECRPLSKTVRFNVLKV
Sbjct: 107 PAHCSPAFRDIHPGDLVTIGECRPLSKTVRFNVLKV 142


>Z69361-2|CAA93288.1| 2165|Caenorhabditis elegans Hypothetical protein
            F25H8.3 protein.
          Length = 2165

 Score = 28.3 bits (60), Expect = 3.3
 Identities = 9/22 (40%), Positives = 15/22 (68%)
 Frame = -2

Query: 96   SSCHLSCSGKRWPVSETLSLSD 31
            +SC++ CSG++W   E  S S+
Sbjct: 1011 ASCYIDCSGRKWNYGEWTSCSE 1032


>Z69360-10|CAA93287.1| 2165|Caenorhabditis elegans Hypothetical
            protein F25H8.3 protein.
          Length = 2165

 Score = 28.3 bits (60), Expect = 3.3
 Identities = 9/22 (40%), Positives = 15/22 (68%)
 Frame = -2

Query: 96   SSCHLSCSGKRWPVSETLSLSD 31
            +SC++ CSG++W   E  S S+
Sbjct: 1011 ASCYIDCSGRKWNYGEWTSCSE 1032


>Z83237-1|CAB05786.2|  423|Caenorhabditis elegans Hypothetical
           protein R06B9.1 protein.
          Length = 423

 Score = 27.5 bits (58), Expect = 5.8
 Identities = 13/28 (46%), Positives = 14/28 (50%)
 Frame = -2

Query: 108 ACPSSSCHLSCSGKRWPVSETLSLSDPP 25
           AC   S  LS     WP S TL L+ PP
Sbjct: 92  ACKDGSNELSAGDYVWPFSYTLPLNVPP 119


>Z69883-3|CAA93741.2|  450|Caenorhabditis elegans Hypothetical
           protein C27C12.4 protein.
          Length = 450

 Score = 27.5 bits (58), Expect = 5.8
 Identities = 13/40 (32%), Positives = 21/40 (52%)
 Frame = +2

Query: 236 SEDEDAENYRDPPRLPSLPTQIQ*VRETAQEHVRTFVALL 355
           S++ED E+  DP  LP     +     +  E +R+ +ALL
Sbjct: 199 SQNEDIESSEDPLILPETENDVTLPASSVSEQLRSTIALL 238


>U23168-3|AAU87831.1| 4034|Caenorhabditis elegans Temporarily assigned
            gene nameprotein 308, isoform b protein.
          Length = 4034

 Score = 27.1 bits (57), Expect = 7.6
 Identities = 10/24 (41%), Positives = 16/24 (66%)
 Frame = +3

Query: 9    ICQXKMADQTEKAFQKQATVFLNR 80
            + Q  M+D+TEK+F+    + LNR
Sbjct: 3328 LAQPNMSDETEKSFEIPRNILLNR 3351


>U23168-1|AAU87832.1| 7548|Caenorhabditis elegans Temporarily assigned
            gene nameprotein 308, isoform c protein.
          Length = 7548

 Score = 27.1 bits (57), Expect = 7.6
 Identities = 10/24 (41%), Positives = 16/24 (66%)
 Frame = +3

Query: 9    ICQXKMADQTEKAFQKQATVFLNR 80
            + Q  M+D+TEK+F+    + LNR
Sbjct: 3328 LAQPNMSDETEKSFEIPRNILLNR 3351


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,133,538
Number of Sequences: 27780
Number of extensions: 223205
Number of successful extensions: 607
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 595
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 606
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 956602620
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)