Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP07_F_K20
         (440 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBP23A10.10 |ppk32||serine/threonine protein kinase Ppk32 |Schi...    42   4e-05
SPBC1734.02c |cdc27|SPBC337.18c|DNA polymerase delta subunit Cdc...    29   0.42 
SPAC6G10.12c |ace2||transcription factor Ace2|Schizosaccharomyce...    29   0.42 
SPAC343.05 |vma1||V-type ATPase subunit A|Schizosaccharomyces po...    27   0.97 
SPAC16E8.16 |||transcription factor TFIIB |Schizosaccharomyces p...    26   3.0  
SPCC1442.09 |trp3||anthranilate synthase component I|Schizosacch...    25   6.8  
SPAC1296.05c |||cyclin L family cyclin|Schizosaccharomyces pombe...    24   9.0  
SPAC3H5.09c |||conserved fungal protein|Schizosaccharomyces pomb...    24   9.0  
SPAC17A5.04c |mde10|mug139|spore wall assembly peptidase Mde10|S...    24   9.0  

>SPBP23A10.10 |ppk32||serine/threonine protein kinase Ppk32
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 749

 Score = 41.9 bits (94), Expect = 4e-05
 Identities = 21/61 (34%), Positives = 34/61 (55%), Gaps = 7/61 (11%)
 Frame = +2

Query: 224 WKIYKGYKKSTKQEASIFVFEKKQLDRWQK---ADRDI----MXETLKRGIIQLTKLRHP 382
           W +Y   KK T +E S+F F+KK L    K    D ++    + E L++ +  L++LRHP
Sbjct: 32  WTVYSASKKGTNEEVSVFTFDKKNLSTLLKRGSIDSNLKTNYVLELLRKDVSSLSRLRHP 91

Query: 383 A 385
           +
Sbjct: 92  S 92


>SPBC1734.02c |cdc27|SPBC337.18c|DNA polymerase delta subunit
           Cdc27|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 372

 Score = 28.7 bits (61), Expect = 0.42
 Identities = 15/54 (27%), Positives = 27/54 (50%), Gaps = 1/54 (1%)
 Frame = -3

Query: 252 DFLYPLYIFHSRP-GPALAMNCVASNSLVTGFPGKTPDNCDTVLLTDE*NLLKT 94
           DFLYP+Y+ H +P    + +     +  ++ FP      CD   L ++ + LK+
Sbjct: 47  DFLYPIYLIHGQPIDDEINLEIDEESQPISNFPVLQYILCDKSSLQEKQSRLKS 100


>SPAC6G10.12c |ace2||transcription factor Ace2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 533

 Score = 28.7 bits (61), Expect = 0.42
 Identities = 14/44 (31%), Positives = 21/44 (47%)
 Frame = +2

Query: 89  MDVFNKFYSSVSNTVSQLSGVLPGNPVTREFEATQFIASAGPGL 220
           ++ F+   SS+  T    S VLP +     F    F+ S+ PGL
Sbjct: 193 LENFDYLSSSIPETSGPASSVLPSSSQLESFNEFMFLPSSPPGL 236


>SPAC343.05 |vma1||V-type ATPase subunit A|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 619

 Score = 27.5 bits (58), Expect = 0.97
 Identities = 18/53 (33%), Positives = 26/53 (49%)
 Frame = +2

Query: 137 QLSGVLPGNPVTREFEATQFIASAGPGLLWKIYKGYKKSTKQEASIFVFEKKQ 295
           + SG+  G+PV R  +        GPGL   IY G ++  KQ     +F+K Q
Sbjct: 76  ETSGLTVGDPVQRTGKPLS--VELGPGLAETIYDGIQRPLKQ-----IFDKSQ 121


>SPAC16E8.16 |||transcription factor TFIIB |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 340

 Score = 25.8 bits (54), Expect = 3.0
 Identities = 12/35 (34%), Positives = 18/35 (51%)
 Frame = +1

Query: 298 RQMAEGRQRHNVGDS*KGYNTANKTTTSGRSLTVQ 402
           R + EG   HN  D+ KG+     ++TS   L V+
Sbjct: 204 RMLTEGGALHNSVDALKGHEYIQSSSTSAEDLMVR 238


>SPCC1442.09 |trp3||anthranilate synthase component
           I|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 489

 Score = 24.6 bits (51), Expect = 6.8
 Identities = 15/34 (44%), Positives = 20/34 (58%)
 Frame = +2

Query: 110 YSSVSNTVSQLSGVLPGNPVTREFEATQFIASAG 211
           +S V + VSQ+SGVL   P    F+A + I  AG
Sbjct: 356 FSHVQHLVSQVSGVL--RPDKTRFDAFRSIFPAG 387


>SPAC1296.05c |||cyclin L family cyclin|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 258

 Score = 24.2 bits (50), Expect = 9.0
 Identities = 11/32 (34%), Positives = 15/32 (46%)
 Frame = -3

Query: 207 ALAMNCVASNSLVTGFPGKTPDNCDTVLLTDE 112
           A+ M CV+  S  T  P    D C+ V+   E
Sbjct: 72  AIVMACVSIGSKTTETPASVQDICNVVVYLKE 103


>SPAC3H5.09c |||conserved fungal protein|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 2685

 Score = 24.2 bits (50), Expect = 9.0
 Identities = 8/23 (34%), Positives = 16/23 (69%)
 Frame = +2

Query: 101  NKFYSSVSNTVSQLSGVLPGNPV 169
            +KFY ++ +   Q++G+L G P+
Sbjct: 1350 DKFYLTIPDFPRQINGILEGKPL 1372


>SPAC17A5.04c |mde10|mug139|spore wall assembly peptidase
           Mde10|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 512

 Score = 24.2 bits (50), Expect = 9.0
 Identities = 9/22 (40%), Positives = 12/22 (54%)
 Frame = -3

Query: 318 SAFCHLSNCFFSNTNIDASCFV 253
           S  CH  +C  S  N D +CF+
Sbjct: 435 SLSCHSDSCKVSCQNEDGTCFI 456


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,651,857
Number of Sequences: 5004
Number of extensions: 30408
Number of successful extensions: 94
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 89
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 94
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 160149590
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)