Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP07_F_K20
(440 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_05_0705 + 24424457-24424948,24425520-24425624,24426097-244262... 40 7e-04
06_03_0382 - 20142830-20144329 35 0.025
01_06_0779 - 31931893-31933317 32 0.18
01_01_0750 + 5798607-5800142 30 0.72
02_01_0721 - 5373449-5373603,5373912-5373981,5374473-5374620,537... 29 2.2
12_02_0134 - 14071190-14071435,14071800-14071988,14072114-140721... 28 3.8
11_06_0468 - 23953075-23953093,23954046-23955106 28 3.8
03_01_0439 + 3409422-3409795,3410672-3410897,3411004-3411282,341... 28 3.8
02_02_0512 + 11092907-11093204,11095454-11095580,11096016-110965... 28 3.8
09_06_0376 - 22694914-22696071,22696111-22696416 27 5.1
09_06_0374 + 22649455-22650024,22650085-22650637,22650812-226511... 27 5.1
07_03_0123 - 13688562-13689146,13689233-13689583,13689665-136898... 27 5.1
08_02_0949 - 22920363-22920685,22922621-22922824,22923170-229232... 27 8.8
05_06_0063 + 25289117-25290643 27 8.8
>01_05_0705 +
24424457-24424948,24425520-24425624,24426097-24426207,
24426675-24426857,24427066-24427192,24427336-24427397,
24427638-24427724,24428703-24428789,24429210-24429323,
24429507-24429635,24429834-24429896,24430333-24430494,
24430611-24430729,24430786-24431794
Length = 949
Score = 40.3 bits (90), Expect = 7e-04
Identities = 29/103 (28%), Positives = 49/103 (47%), Gaps = 11/103 (10%)
Frame = +2
Query: 116 SVSNTVSQLSGVLPGNPVTREFEATQFIASAGPGLLWKIY-----KGYKKSTKQEASIFV 280
+V+ TV +++G P ++FE + S GPGL W+IY +G + S++V
Sbjct: 22 TVTTTVQEVTGPRP----LQDFELLEQAGSGGPGLAWRIYTARPREGAPSAPYPVVSVWV 77
Query: 281 FEKKQLDRWQ------KADRDIMXETLKRGIIQLTKLRHPADL 391
+K+ L + KA D + + +L +LRHP L
Sbjct: 78 LDKRALAEARARAGLTKAAEDAFLDLARADAARLVRLRHPGVL 120
>06_03_0382 - 20142830-20144329
Length = 499
Score = 35.1 bits (77), Expect = 0.025
Identities = 25/80 (31%), Positives = 42/80 (52%), Gaps = 1/80 (1%)
Frame = +2
Query: 182 EATQFIASAGPGLLWKIYKGYKKSTKQEASIFVFEKKQLDRWQKADRDIMXETLKRGIIQ 361
E +F G G K+Y G ++T +E +I V +K++L R E +KR I
Sbjct: 4 ERYEFGPLVGEGNFAKVYLGRHRATGEEVAIKVMDKEKLVRLGAT------ELIKREIAV 57
Query: 362 LTKLRHPADL*LYSI-ASKR 418
+ +LRHP + ++ + A+KR
Sbjct: 58 MQRLRHPNVVRIHEVMANKR 77
>01_06_0779 - 31931893-31933317
Length = 474
Score = 32.3 bits (70), Expect = 0.18
Identities = 19/57 (33%), Positives = 30/57 (52%), Gaps = 5/57 (8%)
Frame = +2
Query: 209 GPGLLWKIYKGYKKSTKQEASIFVFEKKQLDR-----WQKADRDIMXETLKRGIIQL 364
G G K+YK YK +T + +I VF+K+ + R K + D+M R +I+L
Sbjct: 22 GRGTFAKVYKAYKLATGEAVAIKVFDKEAVQRSGTVEQVKREVDVMRRVHHRHVIRL 78
>01_01_0750 + 5798607-5800142
Length = 511
Score = 30.3 bits (65), Expect = 0.72
Identities = 20/71 (28%), Positives = 35/71 (49%)
Frame = +2
Query: 209 GPGLLWKIYKGYKKSTKQEASIFVFEKKQLDRWQKADRDIMXETLKRGIIQLTKLRHPAD 388
G G K+Y +T +E +I V EK +K + + +KR I L ++RHP
Sbjct: 32 GQGNFAKVYHARNVATGEEVAIKVMEK------EKIFKSGLTAHIKREIAVLRRVRHPHI 85
Query: 389 L*LYSIASKRV 421
+ LY + + ++
Sbjct: 86 VQLYEVMATKL 96
>02_01_0721 -
5373449-5373603,5373912-5373981,5374473-5374620,
5374755-5374870,5374955-5375033,5375163-5375233,
5376201-5376344,5376439-5376592,5376906-5376941,
5377145-5377226,5377315-5377408,5377993-5378062,
5378177-5378274,5378745-5378827,5379335-5379428,
5379533-5380036
Length = 665
Score = 28.7 bits (61), Expect = 2.2
Identities = 17/49 (34%), Positives = 26/49 (53%), Gaps = 3/49 (6%)
Frame = +2
Query: 158 GNPVTREFEATQFIASAG---PGLLWKIYKGYKKSTKQEASIFVFEKKQ 295
GNP+ R+F +Q AS LL K+ Y S + +++FVF +Q
Sbjct: 462 GNPIIRDFYNSQLTASGNAYDDTLLAKLESVYTDSGDRSSTMFVFNIEQ 510
>12_02_0134 -
14071190-14071435,14071800-14071988,14072114-14072194,
14072261-14072404,14072528-14072761,14072836-14073981,
14074863-14074922,14075178-14075420,14075509-14075607,
14076196-14076367,14076597-14076735,14077514-14077624,
14077695-14077797,14077885-14077962,14078054-14078122,
14078203-14078275,14078891-14078975,14079473-14079536,
14079963-14080073,14080139-14080213,14080306-14080398,
14080982-14081056,14081172-14081261
Length = 1259
Score = 27.9 bits (59), Expect = 3.8
Identities = 20/61 (32%), Positives = 31/61 (50%)
Frame = +2
Query: 197 IASAGPGLLWKIYKGYKKSTKQEASIFVFEKKQLDRWQKADRDIMXETLKRGIIQLTKLR 376
I G G K+Y G +K T+Q ++ K + + K D+DI L++ I L KL+
Sbjct: 9 IVLVGEGSFGKVYMGRRKYTRQTVAM-----KFILKHGKTDKDI--HNLRQEIEILRKLK 61
Query: 377 H 379
H
Sbjct: 62 H 62
>11_06_0468 - 23953075-23953093,23954046-23955106
Length = 359
Score = 27.9 bits (59), Expect = 3.8
Identities = 15/48 (31%), Positives = 23/48 (47%)
Frame = +2
Query: 185 ATQFIASAGPGLLWKIYKGYKKSTKQEASIFVFEKKQLDRWQKADRDI 328
+T+F+A P + GY +ST S+FV+ +D AD I
Sbjct: 67 STEFVAGGEPWRIRYYPNGYSQSTAGHVSVFVYRVGGVDVGLHADVQI 114
>03_01_0439 +
3409422-3409795,3410672-3410897,3411004-3411282,
3411374-3411550,3411653-3411706,3411806-3411954,
3412534-3412597,3412670-3412840,3412922-3413059,
3413180-3413215
Length = 555
Score = 27.9 bits (59), Expect = 3.8
Identities = 17/54 (31%), Positives = 26/54 (48%), Gaps = 1/54 (1%)
Frame = +2
Query: 197 IASAGPGLLWKIYKGYKKSTKQEASIFVFEKKQLDRWQKADRDIMXETLK-RGI 355
IA G G + + G K E +F+ +KK L + + RD + E + RGI
Sbjct: 254 IAIVGGGYIALEFAGIFNGLKSEVHVFIRQKKVLRGFDEEVRDFIAEQMSLRGI 307
>02_02_0512 +
11092907-11093204,11095454-11095580,11096016-11096560,
11096679-11096890
Length = 393
Score = 27.9 bits (59), Expect = 3.8
Identities = 13/37 (35%), Positives = 22/37 (59%)
Frame = +2
Query: 122 SNTVSQLSGVLPGNPVTREFEATQFIASAGPGLLWKI 232
SNTV +L+G + + +T + F+ SAG L++I
Sbjct: 167 SNTVEELNGTVTEHELTELLSKSLFLISAGTSDLYRI 203
>09_06_0376 - 22694914-22696071,22696111-22696416
Length = 487
Score = 27.5 bits (58), Expect = 5.1
Identities = 12/38 (31%), Positives = 19/38 (50%)
Frame = +2
Query: 113 SSVSNTVSQLSGVLPGNPVTREFEATQFIASAGPGLLW 226
++ T++ L G L + E EA + GPG+LW
Sbjct: 355 AAAERTIADLQGALDSS--AGEVEALRLAGEVGPGMLW 390
>09_06_0374 +
22649455-22650024,22650085-22650637,22650812-22651147,
22651171-22652605,22652939-22653062
Length = 1005
Score = 27.5 bits (58), Expect = 5.1
Identities = 12/38 (31%), Positives = 19/38 (50%)
Frame = +2
Query: 113 SSVSNTVSQLSGVLPGNPVTREFEATQFIASAGPGLLW 226
++ T++ L G L + E EA + GPG+LW
Sbjct: 833 AAAERTIADLQGALDSS--AGEVEALRLAGEVGPGMLW 868
>07_03_0123 - 13688562-13689146,13689233-13689583,13689665-13689861,
13689954-13690072,13690103-13690245,13690332-13690544,
13690649-13690774,13690891-13691028,13691109-13691454,
13691532-13691798,13691939-13691983,13692148-13692349,
13692405-13692507,13692599-13692810,13692891-13693113,
13693211-13693291
Length = 1116
Score = 27.5 bits (58), Expect = 5.1
Identities = 16/46 (34%), Positives = 22/46 (47%), Gaps = 3/46 (6%)
Frame = -1
Query: 353 YPF*ESPTLCLCRPSAICLIA--FSQTQILMLLVLWTFCI-PCIFS 225
YPF P L C AICL+ F ++ + LW + CIF+
Sbjct: 895 YPFTSIPLLAYCTLPAICLLTGKFITPELTNVASLWFMSLFICIFA 940
>08_02_0949 -
22920363-22920685,22922621-22922824,22923170-22923263,
22923376-22923470,22923612-22923783
Length = 295
Score = 26.6 bits (56), Expect = 8.8
Identities = 8/18 (44%), Positives = 13/18 (72%)
Frame = -3
Query: 300 SNCFFSNTNIDASCFVDF 247
S+CF + N D +CF+D+
Sbjct: 105 SSCFLNEKNSDVTCFLDY 122
>05_06_0063 + 25289117-25290643
Length = 508
Score = 26.6 bits (56), Expect = 8.8
Identities = 18/70 (25%), Positives = 34/70 (48%)
Frame = +2
Query: 209 GPGLLWKIYKGYKKSTKQEASIFVFEKKQLDRWQKADRDIMXETLKRGIIQLTKLRHPAD 388
G G K+Y+ + + +I V +K +KA R + +KR I L ++RHP
Sbjct: 44 GHGTFAKVYQARSADSGEPVAIKVLDK------EKAMRHGLVPHIKREIAILRRVRHPNI 97
Query: 389 L*LYSIASKR 418
+ L+ + + +
Sbjct: 98 VRLFEVMATK 107
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,143,980
Number of Sequences: 37544
Number of extensions: 176101
Number of successful extensions: 508
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 497
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 508
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 835800280
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -