Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP07_F_K20
         (440 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC063798-1|AAH63798.1|  929|Homo sapiens SCY1-like 2 (S. cerevis...   113   3e-25
BC132983-1|AAI32984.1|  313|Homo sapiens leucine rich repeat con...    30   4.1  
BC132981-1|AAI32982.1|  313|Homo sapiens leucine rich repeat con...    30   4.1  
AL157714-2|CAI15338.1|  313|Homo sapiens novel protein protein.        30   4.1  
AK098677-1|BAC05375.1|  313|Homo sapiens protein ( Homo sapiens ...    30   4.1  
BC022388-1|AAH22388.1|  613|Homo sapiens DMGDH protein protein.        29   7.1  
AF111858-1|AAF21941.1|  866|Homo sapiens dimethylglycine dehydro...    29   7.1  

>BC063798-1|AAH63798.1|  929|Homo sapiens SCY1-like 2 (S.
           cerevisiae) protein.
          Length = 929

 Score =  113 bits (272), Expect = 3e-25
 Identities = 49/96 (51%), Positives = 72/96 (75%)
 Frame = +2

Query: 95  VFNKFYSSVSNTVSQLSGVLPGNPVTREFEATQFIASAGPGLLWKIYKGYKKSTKQEASI 274
           + NK  S+V+   + ++  + GNPVTREF+  + IAS G GL WKI+ G KKSTKQE ++
Sbjct: 4   MLNKLKSTVTKVTADVTSAVMGNPVTREFDVGRHIASGGNGLAWKIFNGTKKSTKQEVAV 63

Query: 275 FVFEKKQLDRWQKADRDIMXETLKRGIIQLTKLRHP 382
           FVF+KK +D++QK ++D + ++LKRG+ QLT+LRHP
Sbjct: 64  FVFDKKLIDKYQKFEKDQIIDSLKRGVQQLTRLRHP 99


>BC132983-1|AAI32984.1|  313|Homo sapiens leucine rich repeat
           containing 52 protein.
          Length = 313

 Score = 29.9 bits (64), Expect = 4.1
 Identities = 18/50 (36%), Positives = 22/50 (44%), Gaps = 1/50 (2%)
 Frame = -3

Query: 303 LSNCFFSNTNIDASC-FVDFLYPLYIFHSRPGPALAMNCVASNSLVTGFP 157
           L   F S      +C F+DF   L +FH  P   L   CV    L TG+P
Sbjct: 176 LETLFLSGNPWKCNCSFLDFAIFLIVFHMDPSDDLNATCVEPTEL-TGWP 224


>BC132981-1|AAI32982.1|  313|Homo sapiens leucine rich repeat
           containing 52 protein.
          Length = 313

 Score = 29.9 bits (64), Expect = 4.1
 Identities = 18/50 (36%), Positives = 22/50 (44%), Gaps = 1/50 (2%)
 Frame = -3

Query: 303 LSNCFFSNTNIDASC-FVDFLYPLYIFHSRPGPALAMNCVASNSLVTGFP 157
           L   F S      +C F+DF   L +FH  P   L   CV    L TG+P
Sbjct: 176 LETLFLSGNPWKCNCSFLDFAIFLIVFHMDPSDDLNATCVEPTEL-TGWP 224


>AL157714-2|CAI15338.1|  313|Homo sapiens novel protein protein.
          Length = 313

 Score = 29.9 bits (64), Expect = 4.1
 Identities = 18/50 (36%), Positives = 22/50 (44%), Gaps = 1/50 (2%)
 Frame = -3

Query: 303 LSNCFFSNTNIDASC-FVDFLYPLYIFHSRPGPALAMNCVASNSLVTGFP 157
           L   F S      +C F+DF   L +FH  P   L   CV    L TG+P
Sbjct: 176 LETLFLSGNPWKCNCSFLDFAIFLIVFHMDPSDDLNATCVEPTEL-TGWP 224


>AK098677-1|BAC05375.1|  313|Homo sapiens protein ( Homo sapiens
           cDNA FLJ25811 fis, clone TST07369. ).
          Length = 313

 Score = 29.9 bits (64), Expect = 4.1
 Identities = 18/50 (36%), Positives = 22/50 (44%), Gaps = 1/50 (2%)
 Frame = -3

Query: 303 LSNCFFSNTNIDASC-FVDFLYPLYIFHSRPGPALAMNCVASNSLVTGFP 157
           L   F S      +C F+DF   L +FH  P   L   CV    L TG+P
Sbjct: 176 LETLFLSGNPWKCNCSFLDFAIFLIVFHMDPSDDLNATCVEPTEL-TGWP 224


>BC022388-1|AAH22388.1|  613|Homo sapiens DMGDH protein protein.
          Length = 613

 Score = 29.1 bits (62), Expect = 7.1
 Identities = 13/50 (26%), Positives = 28/50 (56%)
 Frame = +2

Query: 119 VSNTVSQLSGVLPGNPVTREFEATQFIASAGPGLLWKIYKGYKKSTKQEA 268
           V++T+S++  +    PV R+ E + ++     GLL+  Y+  +K   Q++
Sbjct: 113 VTSTISEVKALKRELPVLRDLEGSYYLRQERDGLLFGPYESQEKMKVQDS 162


>AF111858-1|AAF21941.1|  866|Homo sapiens dimethylglycine
           dehydrogenase precursor protein.
          Length = 866

 Score = 29.1 bits (62), Expect = 7.1
 Identities = 13/50 (26%), Positives = 28/50 (56%)
 Frame = +2

Query: 119 VSNTVSQLSGVLPGNPVTREFEATQFIASAGPGLLWKIYKGYKKSTKQEA 268
           V++T+S++  +    PV R+ E + ++     GLL+  Y+  +K   Q++
Sbjct: 274 VTSTISEVKALKRELPVLRDLEGSYYLRQERDGLLFGPYESQEKMKVQDS 323


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 56,720,106
Number of Sequences: 237096
Number of extensions: 1090117
Number of successful extensions: 3346
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 3315
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3345
length of database: 76,859,062
effective HSP length: 83
effective length of database: 57,180,094
effective search space used: 3602345922
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)