Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP07_F_K19
         (654 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC664.10 |klp2||kinesin-like protein Klp2|Schizosaccharomyces ...    26   5.5  
SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain |Schizosaccha...    26   5.5  
SPBP8B7.07c |set6||histone lysine methyltransferase Set6 |Schizo...    25   7.2  
SPBC2G5.05 |||transketolase |Schizosaccharomyces pombe|chr 2|||M...    25   9.5  
SPACUNK4.12c |mug138||metallopeptidase|Schizosaccharomyces pombe...    25   9.5  

>SPAC664.10 |klp2||kinesin-like protein Klp2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 817

 Score = 25.8 bits (54), Expect = 5.5
 Identities = 10/33 (30%), Positives = 20/33 (60%)
 Frame = +1

Query: 277 LREGVSVPMQKLHESADGTTKRISSIVQGIRRQ 375
           ++EG S+ MQ++    D   KR+ S +Q ++ +
Sbjct: 336 VQEGASLAMQRVQNKHDLEKKRLQSAIQPLQEE 368


>SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 4196

 Score = 25.8 bits (54), Expect = 5.5
 Identities = 10/51 (19%), Positives = 24/51 (47%)
 Frame = +2

Query: 248  IRLNNLLSSSCVKALASQCRSFTSQLTEQQKEYQALSKEFADKYLKPNAAK 400
            ++L    +  C++   + C+    +L + Q+EY ++  E     L+ +  K
Sbjct: 3334 LKLEQKNAEECIQETIAACKDLDEKLLQLQEEYASMISEIHSMELQMDEVK 3384


>SPBP8B7.07c |set6||histone lysine methyltransferase Set6
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 483

 Score = 25.4 bits (53), Expect = 7.2
 Identities = 17/61 (27%), Positives = 30/61 (49%), Gaps = 5/61 (8%)
 Frame = +2

Query: 236 ALKSIRLNNLLSSSC-----VKALASQCRSFTSQLTEQQKEYQALSKEFADKYLKPNAAK 400
           AL++ + N +L S C     +  L  +  +    +   Q E+QA+S  ++D  L  +AA 
Sbjct: 89  ALQASKQNGILPSVCRLLIRLYLLWQKNPAIIEPMEGHQNEFQAVSSSWSDAELIASAAS 148

Query: 401 H 403
           H
Sbjct: 149 H 149


>SPBC2G5.05 |||transketolase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 685

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 16/58 (27%), Positives = 26/58 (44%), Gaps = 4/58 (6%)
 Frame = -1

Query: 420 NRPSKSCFAAFGFKYLSANSLDNA*YSFCCSVS*LVKLLH----WDANAFTQDDESKL 259
           N+P    F+ + F +L    L     S  CS++  +KL +    WD N  T D  + +
Sbjct: 145 NKPGFDLFSNYTFCFLGDGCLQEGVSSEACSLAGHLKLSNLIAVWDNNKITIDGATSM 202


>SPACUNK4.12c |mug138||metallopeptidase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 969

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 12/30 (40%), Positives = 16/30 (53%)
 Frame = +2

Query: 362 EFADKYLKPNAAKHDLEGRFPFDVIKKLTA 451
           +F DKY   N  K  + GR P DV++   A
Sbjct: 203 KFYDKYYSANIMKLVIIGREPLDVLQDWAA 232


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,475,551
Number of Sequences: 5004
Number of extensions: 45959
Number of successful extensions: 134
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 130
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 134
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 295793106
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)