Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP07_F_K19
         (654 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_01_0195 - 1409820-1409966,1410304-1410360,1410774-1410828,141...    50   1e-06
06_02_0283 + 13726047-13726090,13726160-13726266,13726515-137266...    44   1e-04
02_05_1329 - 35724567-35725255,35725626-35725682,35727667-35729050     30   1.4  
07_03_1569 - 27792739-27794175                                         30   1.9  
11_01_0596 + 4755453-4755490,4755675-4756047,4757739-4758940,475...    29   3.2  
04_01_0180 + 2034021-2034023,2034741-2035088                           28   5.6  
01_06_0100 - 26424769-26425545,26425666-26425697,26425778-264258...    28   7.5  

>05_01_0195 -
           1409820-1409966,1410304-1410360,1410774-1410828,
           1410902-1411002,1411051-1411205,1411395-1411459,
           1411545-1411595,1411817-1411893,1412153-1412262,
           1412355-1412403,1412528-1412572,1412689-1412813,
           1413087-1413228,1413336-1413446
          Length = 429

 Score = 50.4 bits (115), Expect = 1e-06
 Identities = 33/89 (37%), Positives = 48/89 (53%), Gaps = 4/89 (4%)
 Frame = +2

Query: 290 LASQCRSFTSQLT--EQQKEYQALSKEFADKYLKPNAAKHDLEGRFPFDV-IKKLTAT-G 457
           LA +  S  S L   + Q++++    +FA + + P+AA  D    FP DV + KL     
Sbjct: 18  LARRLYSSASSLLFDDTQEQFKESVHKFAQETIAPHAAAIDASNHFPKDVNLWKLMGDFN 77

Query: 458 LMGACVDEEYGGKGLDYLTLAVAVEELSR 544
           L G    EEYGG GL Y+   +A+EE+SR
Sbjct: 78  LHGLTAPEEYGGMGLGYMYHCIAMEEISR 106


>06_02_0283 +
           13726047-13726090,13726160-13726266,13726515-13726621,
           13726735-13726812,13734948-13735071,13735585-13735658,
           13735742-13735801,13737561-13737670,13737806-13737965,
           13738218-13738360,13738461-13738605,13738727-13738819,
           13740070-13740186
          Length = 453

 Score = 44.0 bits (99), Expect = 1e-04
 Identities = 26/92 (28%), Positives = 46/92 (50%)
 Frame = +2

Query: 269 SSSCVKALASQCRSFTSQLTEQQKEYQALSKEFADKYLKPNAAKHDLEGRFPFDVIKKLT 448
           ++S   A AS        LTE++K+ Q   ++F +  + P  +K   +  FPF +I K++
Sbjct: 43  AASTFPAAASNYCQLDELLTEEEKDLQIKVRQFMENEVAPIISKFWEKAEFPFHLIPKMS 102

Query: 449 ATGLMGACVDEEYGGKGLDYLTLAVAVEELSR 544
             G+ G  + + YG  GL     A+   E++R
Sbjct: 103 TLGIAGGTI-KGYGCPGLSGPACAMCFLEIAR 133


>02_05_1329 - 35724567-35725255,35725626-35725682,35727667-35729050
          Length = 709

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 17/38 (44%), Positives = 23/38 (60%)
 Frame = -2

Query: 419 TVLPSHASLRSASSICRRIPWTMLDILFVVPSADS*SF 306
           T+LPSHA L S++S+  R P T     F  P++D  SF
Sbjct: 548 TLLPSHADLASSTSVLYRAPETRTAHAF-TPASDVYSF 584


>07_03_1569 - 27792739-27794175
          Length = 478

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 15/38 (39%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
 Frame = -2

Query: 374 CRRIPWTMLDILFVVPSADS*S-FCIGTLTPSRKTTRA 264
           CR +    LD+L  +PS+D    F +G L+P    TRA
Sbjct: 212 CRALEGEFLDVLAQIPSSDGDKLFAVGPLSPVLPDTRA 249


>11_01_0596 +
           4755453-4755490,4755675-4756047,4757739-4758940,
           4759026-4759392
          Length = 659

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 19/56 (33%), Positives = 25/56 (44%), Gaps = 2/56 (3%)
 Frame = -3

Query: 466 AHQACGCQLFYHIKREPSFQVMLRCVR--LQVFVGEFLGQCLIFFLLFRQLTREAS 305
           A QA   Q F  + R P FQV+L  +R    VF G  LG  +   +    L   +S
Sbjct: 118 AVQALALQGFLRLCRSPEFQVLLNQIRGKAVVFTGHSLGGAIAALVALHYLCTSSS 173


>04_01_0180 + 2034021-2034023,2034741-2035088
          Length = 116

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 14/43 (32%), Positives = 26/43 (60%), Gaps = 2/43 (4%)
 Frame = +2

Query: 251 RLNNLLS--SSCVKALASQCRSFTSQLTEQQKEYQALSKEFAD 373
           +LN+ +   +  ++AL  Q ++ T    E+QK++  L KEFA+
Sbjct: 39  KLNDTIKELNDTIEALERQVQNLTRYKEEKQKQHANLQKEFAE 81


>01_06_0100 -
           26424769-26425545,26425666-26425697,26425778-26425894,
           26426067-26426118,26426229-26426281,26426883-26427585
          Length = 577

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 10/16 (62%), Positives = 11/16 (68%)
 Frame = +3

Query: 516 WPSPSRSCPGGCAXTG 563
           WP+PSRS  GGC   G
Sbjct: 179 WPAPSRSLLGGCRAEG 194


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,551,076
Number of Sequences: 37544
Number of extensions: 295202
Number of successful extensions: 745
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 732
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 744
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1632177336
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)