Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP07_F_K09
         (664 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1711.06 |rpl401|rpl4-1, rpl4|60S ribosomal protein L2|Schizo...   210   1e-55
SPBP8B7.03c |rpl402|rpl4-2, rpl4|60S ribosomal protein L2|Schizo...   210   1e-55
SPBC947.04 |||DIPSY family|Schizosaccharomyces pombe|chr 2|||Manual    26   5.6  
SPCC74.06 |mak3|phk2|histidine kinase Mak3 |Schizosaccharomyces ...    25   9.7  

>SPBC1711.06 |rpl401|rpl4-1, rpl4|60S ribosomal protein
           L2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 363

 Score =  210 bits (514), Expect = 1e-55
 Identities = 102/189 (53%), Positives = 125/189 (66%)
 Frame = +3

Query: 96  LSVARPLXVGVFREERDGAGXQPSPSRFVFKAPIRPDLVNDVHVSMSKNSRQPYCVSKEA 275
           ++ ARP  V ++ ++      +     FVFKAPIRPDLV  VH +++KN RQPY VS++A
Sbjct: 1   MAAARPT-VSIYNKD-GSVSSETLALPFVFKAPIRPDLVRSVHTAVAKNKRQPYAVSEKA 58

Query: 276 GHQTSAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKPWRRWHXXXXXX 455
           GHQTSAESWGTGRA+ARIPRV GGGTHRSGQ AFGNMCR GRMFAPTK WR+WH      
Sbjct: 59  GHQTSAESWGTGRALARIPRVGGGGTHRSGQAAFGNMCRSGRMFAPTKTWRKWHVKVNQN 118

Query: 456 XXXXXXXXXXXXXXXXXXXQARGHIIEKIPELPLVVADKVXEINKTKQAVIFLRRLKAWS 635
                               ARGH IE+IPE+PLVV D V    KTK+AV  L+ +KA+ 
Sbjct: 119 EKRYAIASAVAASGVPSLLLARGHRIEEIPEVPLVVDDAVQSFQKTKEAVALLKEIKAYR 178

Query: 636 DILKVYKSQ 662
           D++KV  S+
Sbjct: 179 DVIKVANSR 187


>SPBP8B7.03c |rpl402|rpl4-2, rpl4|60S ribosomal protein
           L2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 363

 Score =  210 bits (513), Expect = 1e-55
 Identities = 104/190 (54%), Positives = 127/190 (66%), Gaps = 1/190 (0%)
 Frame = +3

Query: 96  LSVARPLXVGVFREERDGA-GXQPSPSRFVFKAPIRPDLVNDVHVSMSKNSRQPYCVSKE 272
           ++ ARP  V ++   +DG+   +     FVFKAPIRPDLV  VH +++KN RQPY VS++
Sbjct: 1   MAAARPT-VSIY--SKDGSVSSETIALPFVFKAPIRPDLVRSVHTAVAKNKRQPYAVSEK 57

Query: 273 AGHQTSAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKPWRRWHXXXXX 452
           AGHQTSAESWGTGRA+ARIPRV GGGTHRSGQ AFGNMCR GRMFAPTK WR+WH     
Sbjct: 58  AGHQTSAESWGTGRALARIPRVGGGGTHRSGQAAFGNMCRSGRMFAPTKTWRKWHVKVNQ 117

Query: 453 XXXXXXXXXXXXXXXXXXXXQARGHIIEKIPELPLVVADKVXEINKTKQAVIFLRRLKAW 632
                                ARGH IE+IPE+PLVV D V    KTK+AV  L+ +KA+
Sbjct: 118 NEKRYAISSAVAASGVPSLLLARGHRIEEIPEVPLVVDDAVQSFQKTKEAVALLKEIKAY 177

Query: 633 SDILKVYKSQ 662
            D++KV  S+
Sbjct: 178 RDVVKVANSR 187


>SPBC947.04 |||DIPSY family|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 973

 Score = 25.8 bits (54), Expect = 5.6
 Identities = 12/31 (38%), Positives = 15/31 (48%)
 Frame = -3

Query: 212 DQVRTYGRLEHEXGGAWLXPCTVSLFSEYTD 120
           D  +TY  +E E  G +    T   FSEY D
Sbjct: 905 DLAKTYFFIEDEGDGTYKFKLTYGAFSEYLD 935


>SPCC74.06 |mak3|phk2|histidine kinase Mak3 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 2344

 Score = 25.0 bits (52), Expect = 9.7
 Identities = 12/28 (42%), Positives = 20/28 (71%), Gaps = 1/28 (3%)
 Frame = +1

Query: 427 GAGTVASTSDSGERPWQQPLLL-PASQR 507
           G+ T+ STS S  RP+ +P L+ P+++R
Sbjct: 507 GSPTILSTSFSLARPYPEPALVSPSTER 534


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,564,666
Number of Sequences: 5004
Number of extensions: 47352
Number of successful extensions: 125
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 114
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 123
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 301829700
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)