Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP07_F_K09
         (664 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF000196-2|AAC24253.1|  345|Caenorhabditis elegans Ribosomal pro...   196   9e-51
Z69302-6|CAL36504.1|  472|Caenorhabditis elegans Hypothetical pr...    32   0.42 
Z29560-5|CAA82664.1| 1385|Caenorhabditis elegans Hypothetical pr...    28   5.1  
Z96047-4|CAB09414.1|  796|Caenorhabditis elegans Hypothetical pr...    25   9.5  

>AF000196-2|AAC24253.1|  345|Caenorhabditis elegans Ribosomal
           protein, large subunitprotein 4 protein.
          Length = 345

 Score =  196 bits (479), Expect = 9e-51
 Identities = 100/186 (53%), Positives = 122/186 (65%)
 Frame = +3

Query: 105 ARPLXVGVFREERDGAGXQPSPSRFVFKAPIRPDLVNDVHVSMSKNSRQPYCVSKEAGHQ 284
           ARPL V V+ E+ +    Q      VF+ PIRPDLV+ +   + +N RQ + V+ +AG Q
Sbjct: 3   ARPL-VTVYDEKYEATQSQIRLPA-VFRTPIRPDLVSFIADQVRRNRRQAHAVNTKAGKQ 60

Query: 285 TSAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKPWRRWHXXXXXXXXX 464
            SAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGG MFAP K +RRWH         
Sbjct: 61  HSAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGHMFAPLKVFRRWHRNVNIAQKR 120

Query: 465 XXXXXXXXXXXXXXXXQARGHIIEKIPELPLVVADKVXEINKTKQAVIFLRRLKAWSDIL 644
                           QARGH+I+++ E+PLVV+DKV    KTK+AV+FLRR   W+DI 
Sbjct: 121 YAVSSAIAASGIPALLQARGHVIDQVAEVPLVVSDKVESFRKTKEAVVFLRRSHLWADIE 180

Query: 645 KVYKSQ 662
           KVY S+
Sbjct: 181 KVYNSK 186


>Z69302-6|CAL36504.1|  472|Caenorhabditis elegans Hypothetical
           protein F40F8.11 protein.
          Length = 472

 Score = 31.9 bits (69), Expect = 0.42
 Identities = 28/91 (30%), Positives = 34/91 (37%), Gaps = 3/91 (3%)
 Frame = +3

Query: 159 QPSPSRFVFKAPIRPDLVNDVHVSMSKNSRQPYCVSKEAGHQTSAESWGTGRAVARIPRV 338
           +PS S+    AP +P          + N R    V K   H+    SW T     +  R 
Sbjct: 111 KPSVSKIAEAAP-KPIFKVARGTVKTVNKRGTKGVQKMPNHRLEGNSWETNGLQNQTARG 169

Query: 339 RGGGTHR---SGQGAFGNMCRGGRMFAPTKP 422
            GGG  R   SG    G   RGGR     KP
Sbjct: 170 GGGGRGRGRGSGGRGRGGFNRGGRFNGAPKP 200


>Z29560-5|CAA82664.1| 1385|Caenorhabditis elegans Hypothetical
           protein K03H1.5 protein.
          Length = 1385

 Score = 28.3 bits (60), Expect = 5.1
 Identities = 12/39 (30%), Positives = 21/39 (53%), Gaps = 2/39 (5%)
 Frame = +2

Query: 305 YRTCCRPNSSCPWWWYP*VRSGC--LR*HVSWWTYVRPH 415
           YRTCC+    C ++++  + +GC   R   + + Y  PH
Sbjct: 823 YRTCCKYADHCEFYYWRRMTNGCQDYRAPAAGYIYGEPH 861


>Z96047-4|CAB09414.1|  796|Caenorhabditis elegans Hypothetical
           protein DY3.5 protein.
          Length = 796

 Score = 25.0 bits (52), Expect(2) = 9.5
 Identities = 17/45 (37%), Positives = 22/45 (48%), Gaps = 1/45 (2%)
 Frame = -1

Query: 403 IRPPRHMLPKA-P*PDLWVPPPRTRGIRATARPVPHDSALVW*PA 272
           I P   ++PK+ P P     PP     RAT RP P + A+   PA
Sbjct: 630 IAPSSSVVPKSQPRPSPTTRPPT----RATIRPTPQNKAVTSRPA 670



 Score = 20.6 bits (41), Expect(2) = 9.5
 Identities = 9/24 (37%), Positives = 14/24 (58%)
 Frame = -1

Query: 154 PAPSRSSLNTPTXKGRATDRLISL 83
           PAP+ SS+ TP+     T ++  L
Sbjct: 669 PAPATSSVVTPSPSQSLTQQIRKL 692


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,644,408
Number of Sequences: 27780
Number of extensions: 287865
Number of successful extensions: 812
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 782
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 811
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1486926498
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)