Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP07_F_K05
         (669 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1565.08 |cdc48|SPAC6F12.01|AAA family ATPase Cdc48|Schizosac...   147   1e-36
SPAC4D7.02c |||glycerophosphoryl diester phosphodiesterase |Schi...    27   1.8  
SPAC5D6.01 |rps2202|rps22-2, rps15a-2|40S ribosomal protein S15a...    27   2.4  
SPAC22A12.04c |rps2201|rps22-1, rps15a-1|40S ribosomal protein S...    27   2.4  
SPAC23C4.02 |crn1||actin binding protein, coronin Crn1|Schizosac...    27   3.2  
SPAPJ698.02c |rps002|rpsa-2, rps0-2, rps0|40S ribosomal protein ...    26   5.6  
SPAC732.02c |||fructose-2,6-bisphosphate 2-phosphatase activity ...    26   5.6  
SPBC28E12.06c |lvs1|SPBC3H7.16|beige protein homolog|Schizosacch...    25   7.5  
SPCC23B6.04c |||sec14 cytosolic factor family|Schizosaccharomyce...    25   7.5  
SPCC1235.09 |||histone deacetylase complex subunit|Schizosacchar...    25   7.5  
SPBC28F2.09 |||transcription factor TFIIA complex large subunit ...    25   9.9  
SPCC24B10.21 |tpi1|tpi|triosephosphate isomerase|Schizosaccharom...    25   9.9  
SPCC550.14 |||vigilin |Schizosaccharomyces pombe|chr 3|||Manual        25   9.9  

>SPAC1565.08 |cdc48|SPAC6F12.01|AAA family ATPase
           Cdc48|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 815

 Score =  147 bits (357), Expect = 1e-36
 Identities = 64/104 (61%), Positives = 83/104 (79%)
 Frame = +2

Query: 356 DVVSIAPCPSVKYGKRVHILPIDDSVEGLTGNLFEVYLKPYFMEAYRPIHRDDTFMVRGG 535
           D+V+I PCP +KY +R+ +LP+ D+VEGLTG+LF+VYLKPYF+EAYRPI + D F+VRG 
Sbjct: 118 DIVTINPCPDIKYAERISVLPLADTVEGLTGSLFDVYLKPYFVEAYRPIRKGDLFVVRGS 177

Query: 536 MRAVEFKVVETDPSPFCIVAPDTVIHCDGEPIKREEEEEALNAV 667
           MR VEFKVV+  P  F IV+ DT+IH +GEPI RE+EE +L  V
Sbjct: 178 MRQVEFKVVDVAPDEFGIVSQDTIIHWEGEPINREDEESSLAEV 221



 Score = 81.0 bits (191), Expect = 1e-16
 Identities = 36/57 (63%), Positives = 48/57 (84%)
 Frame = +1

Query: 118 RKDRPNRLIVEEAVSDDNSVVALSQAKMEQLQLFRGDTVLLKGKRRKETVCIVLSDD 288
           +K +PN L+V++A +DDNSV+ LS   ME LQLFRGDTV++KGKRRK+TV IVL+D+
Sbjct: 39  KKRKPNSLVVDDATNDDNSVITLSSNTMETLQLFRGDTVVVKGKRRKDTVLIVLTDE 95


>SPAC4D7.02c |||glycerophosphoryl diester phosphodiesterase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 319

 Score = 27.5 bits (58), Expect = 1.8
 Identities = 10/26 (38%), Positives = 16/26 (61%), Gaps = 1/26 (3%)
 Frame = +2

Query: 128 DPTVSLSKKQSAMTTQSWH-FHRPKW 202
           DP ++ +  Q  + T+SWH FH  +W
Sbjct: 272 DPVMARALSQGPIVTKSWHYFHYSEW 297


>SPAC5D6.01 |rps2202|rps22-2, rps15a-2|40S ribosomal protein
           S15a|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 130

 Score = 27.1 bits (57), Expect = 2.4
 Identities = 11/27 (40%), Positives = 18/27 (66%), Gaps = 3/27 (11%)
 Frame = -2

Query: 434 QLNHQLAVCGLV---FHISLKDTELWI 363
           QLN ++  CG++   F++ LKD E W+
Sbjct: 64  QLNGRINKCGVISPRFNVKLKDIEKWV 90


>SPAC22A12.04c |rps2201|rps22-1, rps15a-1|40S ribosomal protein
           S15a|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 130

 Score = 27.1 bits (57), Expect = 2.4
 Identities = 11/27 (40%), Positives = 18/27 (66%), Gaps = 3/27 (11%)
 Frame = -2

Query: 434 QLNHQLAVCGLV---FHISLKDTELWI 363
           QLN ++  CG++   F++ LKD E W+
Sbjct: 64  QLNGRINKCGVISPRFNVKLKDIEKWV 90


>SPAC23C4.02 |crn1||actin binding protein, coronin
           Crn1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 601

 Score = 26.6 bits (56), Expect = 3.2
 Identities = 17/42 (40%), Positives = 21/42 (50%)
 Frame = +1

Query: 283 DDNCPE*ENSDEPCREKQPSCASF*CGIHSSVSFSEIWKTSP 408
           +DN  + E   +P REK P   SF     S V+FSE  K  P
Sbjct: 472 EDNHQKEETVTQPKREKTPVEKSFPKPASSPVTFSEDVKKEP 513


>SPAPJ698.02c |rps002|rpsa-2, rps0-2, rps0|40S ribosomal protein
           S0B|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 287

 Score = 25.8 bits (54), Expect = 5.6
 Identities = 12/25 (48%), Positives = 16/25 (64%)
 Frame = +2

Query: 590 VAPDTVIHCDGEPIKREEEEEALNA 664
           V PD   + D E I+REEE++A  A
Sbjct: 200 VMPDLYFYRDPEEIEREEEQKAAAA 224


>SPAC732.02c |||fructose-2,6-bisphosphate 2-phosphatase activity
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 408

 Score = 25.8 bits (54), Expect = 5.6
 Identities = 9/26 (34%), Positives = 17/26 (65%)
 Frame = -2

Query: 329 SRHGSSEFSHSGQLSSESTMQTVSLR 252
           SRHG S+F+  G++  +S++    L+
Sbjct: 212 SRHGESQFNVEGKIGGDSSLSPQGLK 237


>SPBC28E12.06c |lvs1|SPBC3H7.16|beige protein
            homolog|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2609

 Score = 25.4 bits (53), Expect = 7.5
 Identities = 9/31 (29%), Positives = 17/31 (54%)
 Frame = +2

Query: 110  PPXARTDPTVSLSKKQSAMTTQSWHFHRPKW 202
            PP A+ DP + + K + A+ ++    H  +W
Sbjct: 2106 PPWAKGDPAIFVQKNREALESKYVSAHLHEW 2136


>SPCC23B6.04c |||sec14 cytosolic factor family|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1008

 Score = 25.4 bits (53), Expect = 7.5
 Identities = 10/38 (26%), Positives = 22/38 (57%)
 Frame = +1

Query: 148 EEAVSDDNSVVALSQAKMEQLQLFRGDTVLLKGKRRKE 261
           E+AV D+N+ ++L+  +  +    RGD  ++ G   ++
Sbjct: 247 EKAVCDENTKISLTNTEHYKFHSLRGDVEVVVGDLERD 284


>SPCC1235.09 |||histone deacetylase complex
           subunit|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 564

 Score = 25.4 bits (53), Expect = 7.5
 Identities = 15/47 (31%), Positives = 27/47 (57%), Gaps = 4/47 (8%)
 Frame = +1

Query: 142 IVEEAVSDDNSVVALSQA-KMEQLQLFR---GDTVLLKGKRRKETVC 270
           + +E  SD++ ++A++     EQ+   R    D  LL GK++KE +C
Sbjct: 509 LFKELGSDNSELIAVTNVLPEEQVNFLRWSFDDKDLLIGKQKKEIIC 555


>SPBC28F2.09 |||transcription factor TFIIA complex large subunit
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 369

 Score = 25.0 bits (52), Expect = 9.9
 Identities = 15/59 (25%), Positives = 25/59 (42%)
 Frame = -2

Query: 389 SLKDTELWIPHQKDAHEGCFSRHGSSEFSHSGQLSSESTMQTVSLRRLPLSKTVSPRKS 213
           S     L +P  + A     + H ++  + +GQ  +  +  T S   L L    SP+KS
Sbjct: 155 SYSSNSLQLPTNQTADSPIINDHSTANVTSTGQEHAPDSSSTNSFGGLLLPNQNSPKKS 213


>SPCC24B10.21 |tpi1|tpi|triosephosphate
           isomerase|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 249

 Score = 25.0 bits (52), Expect = 9.9
 Identities = 11/33 (33%), Positives = 16/33 (48%)
 Frame = +2

Query: 569 DPSPFCIVAPDTVIHCDGEPIKREEEEEALNAV 667
           D + F +    TV+ C GE +   E  E +N V
Sbjct: 111 DKTKFALEQGLTVVACIGETLAEREANETINVV 143


>SPCC550.14 |||vigilin |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1279

 Score = 25.0 bits (52), Expect = 9.9
 Identities = 21/69 (30%), Positives = 30/69 (43%)
 Frame = +2

Query: 359 VVSIAPCPSVKYGKRVHILPIDDSVEGLTGNLFEVYLKPYFMEAYRPIHRDDTFMVRGGM 538
           V  I   PSV Y K + + P   ++  + G   E  +      +YRP   DD   +RG  
Sbjct: 647 VSEIIQVPSV-YHKHI-VGPKGTTLNAIIGKSEENVIVQLGKVSYRPDSTDDDVYIRGFS 704

Query: 539 RAVEFKVVE 565
           + VE  V E
Sbjct: 705 KDVERVVSE 713


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,757,458
Number of Sequences: 5004
Number of extensions: 56346
Number of successful extensions: 179
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 174
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 179
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 305854096
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)