Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP07_F_K05
(669 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_01_0364 - 2834446-2834742,2834838-2835197,2835281-2835562,283... 177 9e-45
10_08_0170 + 15397381-15397418,15397519-15397681,15398419-153986... 174 6e-44
08_02_0657 - 19749835-19751942,19753123-19753561 128 5e-30
03_05_0754 + 27452203-27452242,27452360-27455611,27456480-274565... 33 0.27
07_03_1644 - 28338535-28339103,28339512-28340326,28341104-283412... 29 4.4
05_01_0384 + 2997465-2999777,2999960-3000035,3003027-3003102,300... 28 7.7
01_01_1044 + 8231933-8231941,8232091-8232166,8232423-8232871 28 7.7
>03_01_0364 -
2834446-2834742,2834838-2835197,2835281-2835562,
2835634-2835705,2835798-2836019,2836105-2836871,
2837206-2837434,2838027-2838189,2838313-2838350
Length = 809
Score = 177 bits (430), Expect = 9e-45
Identities = 78/115 (67%), Positives = 92/115 (80%)
Frame = +2
Query: 305 KIRMXXXXXXXXXXXXSDVVSIAPCPSVKYGKRVHILPIDDSVEGLTGNLFEVYLKPYFM 484
KIRM DVVS+ CP VKYGKRVHILPIDD+VEG+TGNLF+ +LKPYF+
Sbjct: 88 KIRMNKVVRKNLRVRLGDVVSVHQCPDVKYGKRVHILPIDDTVEGITGNLFDAFLKPYFL 147
Query: 485 EAYRPIHRDDTFMVRGGMRAVEFKVVETDPSPFCIVAPDTVIHCDGEPIKREEEE 649
EAYRP+ + D F+VRGGMR+VEFKV+ETDP+ +CIVAPDT I CDGEPIKRE+EE
Sbjct: 148 EAYRPLRKGDLFLVRGGMRSVEFKVIETDPAEYCIVAPDTEIFCDGEPIKREDEE 202
Score = 94.3 bits (224), Expect = 8e-20
Identities = 41/61 (67%), Positives = 51/61 (83%)
Frame = +1
Query: 118 RKDRPNRLIVEEAVSDDNSVVALSQAKMEQLQLFRGDTVLLKGKRRKETVCIVLSDDNCP 297
RK PNRL+V+EA +DDNSV+ + ME+LQLFRGDTVLLKGK+RK+T+CIVL+DD C
Sbjct: 26 RKKSPNRLVVDEATNDDNSVIGMHPDTMEKLQLFRGDTVLLKGKKRKDTICIVLADDTCE 85
Query: 298 E 300
E
Sbjct: 86 E 86
>10_08_0170 +
15397381-15397418,15397519-15397681,15398419-15398647,
15398777-15399543,15399650-15399871,15399961-15400032,
15400100-15400408,15400491-15400850,15401199-15401492
Length = 817
Score = 174 bits (423), Expect = 6e-44
Identities = 77/115 (66%), Positives = 91/115 (79%)
Frame = +2
Query: 305 KIRMXXXXXXXXXXXXSDVVSIAPCPSVKYGKRVHILPIDDSVEGLTGNLFEVYLKPYFM 484
KIRM DVVS+ C VKYGKRVHILPIDD+VEG+TGNLF+ +LKPYF+
Sbjct: 88 KIRMNKVVRKNLRVRLGDVVSVHQCQDVKYGKRVHILPIDDTVEGITGNLFDAFLKPYFL 147
Query: 485 EAYRPIHRDDTFMVRGGMRAVEFKVVETDPSPFCIVAPDTVIHCDGEPIKREEEE 649
EAYRP+ + D F+VRGGMR+VEFKV+ETDP+ +CIVAPDT I CDGEPIKRE+EE
Sbjct: 148 EAYRPVRKGDLFLVRGGMRSVEFKVIETDPTEYCIVAPDTEIFCDGEPIKREDEE 202
Score = 95.5 bits (227), Expect = 3e-20
Identities = 43/61 (70%), Positives = 52/61 (85%)
Frame = +1
Query: 118 RKDRPNRLIVEEAVSDDNSVVALSQAKMEQLQLFRGDTVLLKGKRRKETVCIVLSDDNCP 297
RK PNRL+V+EA +DDNSVVAL ME+LQLFRGDTVLLKGK+RK+T+CIVL+D+ C
Sbjct: 26 RKKSPNRLVVDEATNDDNSVVALHPDTMERLQLFRGDTVLLKGKKRKDTICIVLADETCE 85
Query: 298 E 300
E
Sbjct: 86 E 86
>08_02_0657 - 19749835-19751942,19753123-19753561
Length = 848
Score = 128 bits (308), Expect = 5e-30
Identities = 58/100 (58%), Positives = 79/100 (79%), Gaps = 2/100 (2%)
Frame = +2
Query: 356 DVVSIAPCPSVKYGKRVHILPIDDSVEGLTGNLFEVYLKPYFMEAYRPIHRDDTFMVRGG 535
D+V++ PCP+++ KRV + P DDSVEG++G+LFE YLKPYFM+A RP+ + D F+VRG
Sbjct: 108 DLVTVKPCPTIRNAKRVQLRPFDDSVEGISGDLFEPYLKPYFMDALRPVKKGDRFLVRGH 167
Query: 536 MRAVEFKVVETDPSPF-CIVAPDTVIHCD-GEPIKREEEE 649
M AVEFKV++T+P+ IVA DT I CD G+P+KRE+EE
Sbjct: 168 MHAVEFKVMDTEPNNEPVIVAGDTEIFCDEGDPVKREDEE 207
Score = 70.5 bits (165), Expect = 1e-12
Identities = 32/64 (50%), Positives = 46/64 (71%), Gaps = 3/64 (4%)
Frame = +1
Query: 118 RKDRPNRLIVEEA---VSDDNSVVALSQAKMEQLQLFRGDTVLLKGKRRKETVCIVLSDD 288
+K PNRL+ ++A V+ DNS V LS+A ME+L +FRGD V L+G+RR+E VC D+
Sbjct: 26 KKKSPNRLMADDAEGGVAVDNSTVTLSEATMEELGIFRGDLVTLRGRRRREAVCYAQKDE 85
Query: 289 NCPE 300
+CP+
Sbjct: 86 SCPD 89
>03_05_0754 + 27452203-27452242,27452360-27455611,27456480-27456533,
27456774-27456872,27456948-27457012,27457476-27457575,
27458326-27458408,27458494-27458569,27458920-27459698
Length = 1515
Score = 32.7 bits (71), Expect = 0.27
Identities = 17/42 (40%), Positives = 24/42 (57%)
Frame = +1
Query: 469 EAVLHGGLPSDPS*RHLHGPGGHARRRVQSGRNRSITILHRG 594
E++ H L + S HLHG G RR + +GR R+I +L G
Sbjct: 1248 ESLPHETLQASSSAVHLHGHHGRLRRFLAAGRLRAIDVLGHG 1289
>07_03_1644 -
28338535-28339103,28339512-28340326,28341104-28341205,
28342469-28342594,28342782-28343071
Length = 633
Score = 28.7 bits (61), Expect = 4.4
Identities = 13/37 (35%), Positives = 21/37 (56%)
Frame = -3
Query: 565 FDHFELDGAHAPPDHEGVVTMDRTVSLHEVRLQVYFE 455
F+ L+ DHE V+ D+ VSL +V++ Y+E
Sbjct: 401 FEFIPLEDGLRLTDHEEVIENDKLVSLVDVKVGCYYE 437
>05_01_0384 + 2997465-2999777,2999960-3000035,3003027-3003102,
3003571-3004442,3004592-3004773,3005206-3005295,
3005388-3005675,3005776-3005997,3006053-3006133,
3006634-3006861
Length = 1475
Score = 27.9 bits (59), Expect = 7.7
Identities = 15/65 (23%), Positives = 29/65 (44%)
Frame = +2
Query: 119 ARTDPTVSLSKKQSAMTTQSWHFHRPKWSNFNSSVVTQSCSKANAARKPFASCSQMIIAL 298
A + +V SK Q+ + WH + W N S T+ + + PF ++++
Sbjct: 1340 AEVESSVLCSKWQNEIKDPEWHPFKSVWVNGKESCRTEFQTLQSTQDDPFTGNLKLLVRE 1399
Query: 299 NEKIR 313
++ IR
Sbjct: 1400 SKVIR 1404
>01_01_1044 + 8231933-8231941,8232091-8232166,8232423-8232871
Length = 177
Score = 27.9 bits (59), Expect = 7.7
Identities = 14/37 (37%), Positives = 22/37 (59%), Gaps = 2/37 (5%)
Frame = +1
Query: 226 DTVLLKGKRRKE--TVCIVLSDDNCPE*ENSDEPCRE 330
D V + K RK+ + CIV +D+ P+ E +PC+E
Sbjct: 49 DPVRIVRKLRKKCFSACIVSVEDDKPKEEEKKDPCKE 85
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,436,593
Number of Sequences: 37544
Number of extensions: 389954
Number of successful extensions: 1117
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1089
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1115
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1691314196
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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