Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP07_F_K05
(669 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BC110913-1|AAI10914.1| 806|Homo sapiens valosin-containing prot... 205 1e-52
AL353795-2|CAH70993.1| 806|Homo sapiens valosin-containing prot... 205 1e-52
AF313485-1|AAG29873.1| 307|Homo sapiens valosin-containing prot... 205 1e-52
AF100752-1|AAD43016.1| 806|Homo sapiens transitional endoplasmi... 205 1e-52
AC004472-1|AAC07984.1| 806|Homo sapiens TERA_HUMAN protein. 205 1e-52
BC121794-1|AAI21795.1| 806|Homo sapiens valosin-containing prot... 202 7e-52
BC007562-1|AAH07562.2| 644|Homo sapiens VCP protein protein. 81 5e-15
>BC110913-1|AAI10914.1| 806|Homo sapiens valosin-containing protein
protein.
Length = 806
Score = 205 bits (501), Expect = 1e-52
Identities = 91/123 (73%), Positives = 104/123 (84%)
Frame = +2
Query: 299 NEKIRMXXXXXXXXXXXXSDVVSIAPCPSVKYGKRVHILPIDDSVEGLTGNLFEVYLKPY 478
+EKIRM DV+SI PCP VKYGKR+H+LPIDD+VEG+TGNLFEVYLKPY
Sbjct: 79 DEKIRMNRVVRNNLRVRLGDVISIQPCPDVKYGKRIHVLPIDDTVEGITGNLFEVYLKPY 138
Query: 479 FMEAYRPIHRDDTFMVRGGMRAVEFKVVETDPSPFCIVAPDTVIHCDGEPIKREEEEEAL 658
F+EAYRPI + D F+VRGGMRAVEFKVVETDPSP+CIVAPDTVIHC+GEPIKRE+EEE+L
Sbjct: 139 FLEAYRPIRKGDIFLVRGGMRAVEFKVVETDPSPYCIVAPDTVIHCEGEPIKREDEEESL 198
Query: 659 NAV 667
N V
Sbjct: 199 NEV 201
Score = 102 bits (244), Expect = 1e-21
Identities = 45/61 (73%), Positives = 57/61 (93%)
Frame = +1
Query: 118 RKDRPNRLIVEEAVSDDNSVVALSQAKMEQLQLFRGDTVLLKGKRRKETVCIVLSDDNCP 297
+K+RPNRLIV+EA+++DNSVV+LSQ KM++LQLFRGDTVLLKGK+R+E VCIVLSDD C
Sbjct: 19 QKNRPNRLIVDEAINEDNSVVSLSQPKMDELQLFRGDTVLLKGKKRREAVCIVLSDDTCS 78
Query: 298 E 300
+
Sbjct: 79 D 79
>AL353795-2|CAH70993.1| 806|Homo sapiens valosin-containing protein
protein.
Length = 806
Score = 205 bits (501), Expect = 1e-52
Identities = 91/123 (73%), Positives = 104/123 (84%)
Frame = +2
Query: 299 NEKIRMXXXXXXXXXXXXSDVVSIAPCPSVKYGKRVHILPIDDSVEGLTGNLFEVYLKPY 478
+EKIRM DV+SI PCP VKYGKR+H+LPIDD+VEG+TGNLFEVYLKPY
Sbjct: 79 DEKIRMNRVVRNNLRVRLGDVISIQPCPDVKYGKRIHVLPIDDTVEGITGNLFEVYLKPY 138
Query: 479 FMEAYRPIHRDDTFMVRGGMRAVEFKVVETDPSPFCIVAPDTVIHCDGEPIKREEEEEAL 658
F+EAYRPI + D F+VRGGMRAVEFKVVETDPSP+CIVAPDTVIHC+GEPIKRE+EEE+L
Sbjct: 139 FLEAYRPIRKGDIFLVRGGMRAVEFKVVETDPSPYCIVAPDTVIHCEGEPIKREDEEESL 198
Query: 659 NAV 667
N V
Sbjct: 199 NEV 201
Score = 102 bits (244), Expect = 1e-21
Identities = 45/61 (73%), Positives = 57/61 (93%)
Frame = +1
Query: 118 RKDRPNRLIVEEAVSDDNSVVALSQAKMEQLQLFRGDTVLLKGKRRKETVCIVLSDDNCP 297
+K+RPNRLIV+EA+++DNSVV+LSQ KM++LQLFRGDTVLLKGK+R+E VCIVLSDD C
Sbjct: 19 QKNRPNRLIVDEAINEDNSVVSLSQPKMDELQLFRGDTVLLKGKKRREAVCIVLSDDTCS 78
Query: 298 E 300
+
Sbjct: 79 D 79
>AF313485-1|AAG29873.1| 307|Homo sapiens valosin-containing protein
protein.
Length = 307
Score = 205 bits (501), Expect = 1e-52
Identities = 91/123 (73%), Positives = 104/123 (84%)
Frame = +2
Query: 299 NEKIRMXXXXXXXXXXXXSDVVSIAPCPSVKYGKRVHILPIDDSVEGLTGNLFEVYLKPY 478
+EKIRM DV+SI PCP VKYGKR+H+LPIDD+VEG+TGNLFEVYLKPY
Sbjct: 17 DEKIRMNRVVRNNLRVRLGDVISIQPCPDVKYGKRIHVLPIDDTVEGITGNLFEVYLKPY 76
Query: 479 FMEAYRPIHRDDTFMVRGGMRAVEFKVVETDPSPFCIVAPDTVIHCDGEPIKREEEEEAL 658
F+EAYRPI + D F+VRGGMRAVEFKVVETDPSP+CIVAPDTVIHC+GEPIKRE+EEE+L
Sbjct: 77 FLEAYRPIRKGDIFLVRGGMRAVEFKVVETDPSPYCIVAPDTVIHCEGEPIKREDEEESL 136
Query: 659 NAV 667
N V
Sbjct: 137 NEV 139
>AF100752-1|AAD43016.1| 806|Homo sapiens transitional endoplasmic
reticulum ATPase protein.
Length = 806
Score = 205 bits (501), Expect = 1e-52
Identities = 91/123 (73%), Positives = 104/123 (84%)
Frame = +2
Query: 299 NEKIRMXXXXXXXXXXXXSDVVSIAPCPSVKYGKRVHILPIDDSVEGLTGNLFEVYLKPY 478
+EKIRM DV+SI PCP VKYGKR+H+LPIDD+VEG+TGNLFEVYLKPY
Sbjct: 79 DEKIRMNRVVRNNLRVRLGDVISIQPCPDVKYGKRIHVLPIDDTVEGITGNLFEVYLKPY 138
Query: 479 FMEAYRPIHRDDTFMVRGGMRAVEFKVVETDPSPFCIVAPDTVIHCDGEPIKREEEEEAL 658
F+EAYRPI + D F+VRGGMRAVEFKVVETDPSP+CIVAPDTVIHC+GEPIKRE+EEE+L
Sbjct: 139 FLEAYRPIRKGDIFLVRGGMRAVEFKVVETDPSPYCIVAPDTVIHCEGEPIKREDEEESL 198
Query: 659 NAV 667
N V
Sbjct: 199 NEV 201
Score = 102 bits (244), Expect = 1e-21
Identities = 45/61 (73%), Positives = 57/61 (93%)
Frame = +1
Query: 118 RKDRPNRLIVEEAVSDDNSVVALSQAKMEQLQLFRGDTVLLKGKRRKETVCIVLSDDNCP 297
+K+RPNRLIV+EA+++DNSVV+LSQ KM++LQLFRGDTVLLKGK+R+E VCIVLSDD C
Sbjct: 19 QKNRPNRLIVDEAINEDNSVVSLSQPKMDELQLFRGDTVLLKGKKRREAVCIVLSDDTCS 78
Query: 298 E 300
+
Sbjct: 79 D 79
>AC004472-1|AAC07984.1| 806|Homo sapiens TERA_HUMAN protein.
Length = 806
Score = 205 bits (501), Expect = 1e-52
Identities = 91/123 (73%), Positives = 104/123 (84%)
Frame = +2
Query: 299 NEKIRMXXXXXXXXXXXXSDVVSIAPCPSVKYGKRVHILPIDDSVEGLTGNLFEVYLKPY 478
+EKIRM DV+SI PCP VKYGKR+H+LPIDD+VEG+TGNLFEVYLKPY
Sbjct: 79 DEKIRMNRVVRNNLRVRLGDVISIQPCPDVKYGKRIHVLPIDDTVEGITGNLFEVYLKPY 138
Query: 479 FMEAYRPIHRDDTFMVRGGMRAVEFKVVETDPSPFCIVAPDTVIHCDGEPIKREEEEEAL 658
F+EAYRPI + D F+VRGGMRAVEFKVVETDPSP+CIVAPDTVIHC+GEPIKRE+EEE+L
Sbjct: 139 FLEAYRPIRKGDIFLVRGGMRAVEFKVVETDPSPYCIVAPDTVIHCEGEPIKREDEEESL 198
Query: 659 NAV 667
N V
Sbjct: 199 NEV 201
Score = 102 bits (244), Expect = 1e-21
Identities = 45/61 (73%), Positives = 57/61 (93%)
Frame = +1
Query: 118 RKDRPNRLIVEEAVSDDNSVVALSQAKMEQLQLFRGDTVLLKGKRRKETVCIVLSDDNCP 297
+K+RPNRLIV+EA+++DNSVV+LSQ KM++LQLFRGDTVLLKGK+R+E VCIVLSDD C
Sbjct: 19 QKNRPNRLIVDEAINEDNSVVSLSQPKMDELQLFRGDTVLLKGKKRREAVCIVLSDDTCS 78
Query: 298 E 300
+
Sbjct: 79 D 79
>BC121794-1|AAI21795.1| 806|Homo sapiens valosin-containing protein
protein.
Length = 806
Score = 202 bits (494), Expect = 7e-52
Identities = 90/123 (73%), Positives = 103/123 (83%)
Frame = +2
Query: 299 NEKIRMXXXXXXXXXXXXSDVVSIAPCPSVKYGKRVHILPIDDSVEGLTGNLFEVYLKPY 478
+EKIRM DV+SI PCP VKYGKR+H+LPIDD+VEG+TGNLFEVYLKPY
Sbjct: 79 DEKIRMNRVVRNNLRVRLGDVISIQPCPDVKYGKRIHVLPIDDTVEGITGNLFEVYLKPY 138
Query: 479 FMEAYRPIHRDDTFMVRGGMRAVEFKVVETDPSPFCIVAPDTVIHCDGEPIKREEEEEAL 658
F+EAYRPI + D F+VRGGMRAVEFKVVET PSP+CIVAPDTVIHC+GEPIKRE+EEE+L
Sbjct: 139 FLEAYRPIRKGDIFLVRGGMRAVEFKVVETHPSPYCIVAPDTVIHCEGEPIKREDEEESL 198
Query: 659 NAV 667
N V
Sbjct: 199 NEV 201
Score = 102 bits (244), Expect = 1e-21
Identities = 45/61 (73%), Positives = 57/61 (93%)
Frame = +1
Query: 118 RKDRPNRLIVEEAVSDDNSVVALSQAKMEQLQLFRGDTVLLKGKRRKETVCIVLSDDNCP 297
+K+RPNRLIV+EA+++DNSVV+LSQ KM++LQLFRGDTVLLKGK+R+E VCIVLSDD C
Sbjct: 19 QKNRPNRLIVDEAINEDNSVVSLSQPKMDELQLFRGDTVLLKGKKRREAVCIVLSDDTCS 78
Query: 298 E 300
+
Sbjct: 79 D 79
>BC007562-1|AAH07562.2| 644|Homo sapiens VCP protein protein.
Length = 644
Score = 80.6 bits (190), Expect = 5e-15
Identities = 34/39 (87%), Positives = 38/39 (97%)
Frame = +2
Query: 551 FKVVETDPSPFCIVAPDTVIHCDGEPIKREEEEEALNAV 667
FKVVETDPSP+CIVAPDTVIHC+GEPIKRE+EEE+LN V
Sbjct: 1 FKVVETDPSPYCIVAPDTVIHCEGEPIKREDEEESLNEV 39
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 96,804,381
Number of Sequences: 237096
Number of extensions: 2080160
Number of successful extensions: 4382
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 4204
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4382
length of database: 76,859,062
effective HSP length: 87
effective length of database: 56,231,710
effective search space used: 7591280850
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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