Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP07_F_K03
         (653 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC688.04c |gst3||glutathione S-transferase |Schizosaccharomyce...    38   0.001
SPAC24C9.06c |||aconitate hydratase|Schizosaccharomyces pombe|ch...    30   0.25 
SPAC1527.01 |mok11|SPAC23D3.15|alpha-1,3-glucan synthase Mok11|S...    26   4.1  
SPCC18B5.06 |erf1|sup45|translation release factor eRF1|Schizosa...    25   7.2  
SPCC338.18 |||sequence orphan|Schizosaccharomyces pombe|chr 3|||...    25   9.5  

>SPAC688.04c |gst3||glutathione S-transferase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 242

 Score = 37.9 bits (84), Expect = 0.001
 Identities = 18/53 (33%), Positives = 28/53 (52%)
 Frame = +3

Query: 183 NRISSENWPEFKPKTPFGQMPVLEIDGKQYAQSTAICRYLGRKYGLAGANDEE 341
           +R+     P +   +P G+ P++  DG  Y +S AI  +L RKYG +    EE
Sbjct: 32  DRVDGRAPPAYTKLSPLGKSPIVVDDGVTYIESAAILEHLVRKYGPSFKPSEE 84


>SPAC24C9.06c |||aconitate hydratase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 778

 Score = 30.3 bits (65), Expect = 0.25
 Identities = 12/26 (46%), Positives = 16/26 (61%)
 Frame = -1

Query: 356 VDLEGLLVIGPGEPVLATEVPADGGA 279
           VD++GL    PG+P+     PADG A
Sbjct: 719 VDIDGLTTFAPGKPLTLVVHPADGSA 744


>SPAC1527.01 |mok11|SPAC23D3.15|alpha-1,3-glucan synthase
           Mok11|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2397

 Score = 26.2 bits (55), Expect = 4.1
 Identities = 17/74 (22%), Positives = 33/74 (44%)
 Frame = +3

Query: 90  CRTLSSTISPXKALGESQRLLLAYGGQEFEDNRISSENWPEFKPKTPFGQMPVLEIDGKQ 269
           C +  + +SP  +  + + L+  Y   + E    +S ++ +     P G +P L +DG  
Sbjct: 653 CFSKEAIVSPFISGTKIKNLVYPYDEYQLE----ASSHFSQISNTEPMGCLPELGLDGYG 708

Query: 270 YAQSTAICRYLGRK 311
           Y     I  Y+ R+
Sbjct: 709 YKLFVPINEYIPRR 722


>SPCC18B5.06 |erf1|sup45|translation release factor
           eRF1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 390

 Score = 25.4 bits (53), Expect = 7.2
 Identities = 11/21 (52%), Positives = 14/21 (66%)
 Frame = +3

Query: 549 FVYAGMYDYLKAMLQKPDLXQ 611
           FV  G+YDY+ +M  K DL Q
Sbjct: 212 FVARGLYDYIFSMAVKLDLKQ 232


>SPCC338.18 |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 117

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 10/19 (52%), Positives = 13/19 (68%)
 Frame = +3

Query: 210 EFKPKTPFGQMPVLEIDGK 266
           E K ++P GQ P LE DG+
Sbjct: 11  ELKDESPIGQSPHLENDGR 29


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,987,142
Number of Sequences: 5004
Number of extensions: 34123
Number of successful extensions: 113
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 110
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 113
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 295793106
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)