Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP07_F_K01
         (628 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1235.15 |dga1|SPCC548.01|diacylglycerol O-acyltransferase |S...    27   1.7  
SPBC577.06c |||phosphatidylinositol kinase |Schizosaccharomyces ...    26   3.9  
SPAPB1A10.04c |cwp1||geranylgeranyltransferase I alpha subunit C...    25   6.8  
SPBC1683.12 |||nicotinic acid plasma membrane transporter |Schiz...    25   9.0  
SPAC2C4.17c |||MS ion channel protein 2|Schizosaccharomyces pomb...    25   9.0  

>SPCC1235.15 |dga1|SPCC548.01|diacylglycerol O-acyltransferase
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 345

 Score = 27.5 bits (58), Expect = 1.7
 Identities = 11/32 (34%), Positives = 20/32 (62%)
 Frame = +1

Query: 487 GIICAEGGLWRDQRKLITSWLKSFGMSKHSVS 582
           GII +   + +D R+ ++ WL++  +  HSVS
Sbjct: 9   GIIASTPPISKDSRRNVSHWLQALAVFLHSVS 40


>SPBC577.06c |||phosphatidylinositol kinase |Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 1877

 Score = 26.2 bits (55), Expect = 3.9
 Identities = 21/64 (32%), Positives = 29/64 (45%)
 Frame = +1

Query: 19   LHVTAGASESNSCS*RGDAALTSYRLLVSTTFGLLVLTIPN*YQLYLSSNMDLYFIWLVT 198
            LHV A  S   S   + D+ L  Y L VSTT    +L I       L++ M + + WL  
Sbjct: 1238 LHVAAEISVMRSLRDKLDSFLLRYPLKVSTTLKQKLLII------LLNNEMYMLYTWLTP 1291

Query: 199  FVAG 210
             + G
Sbjct: 1292 VLHG 1295


>SPAPB1A10.04c |cwp1||geranylgeranyltransferase I alpha subunit
           Cwp1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 294

 Score = 25.4 bits (53), Expect = 6.8
 Identities = 8/20 (40%), Positives = 13/20 (65%)
 Frame = +3

Query: 486 WNYLCRRRFVEGPKEINNIV 545
           WNYLC      GP +++N++
Sbjct: 221 WNYLCGVLDKSGPSKLDNLI 240


>SPBC1683.12 |||nicotinic acid plasma membrane transporter
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 482

 Score = 25.0 bits (52), Expect = 9.0
 Identities = 9/23 (39%), Positives = 15/23 (65%)
 Frame = +3

Query: 147 STVSIK*YGPLFYLAGNVRGWVL 215
           S + +K +GP +YL+  + GW L
Sbjct: 99  SVLLVKKFGPHYYLSAMIIGWSL 121


>SPAC2C4.17c |||MS ion channel protein 2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 840

 Score = 25.0 bits (52), Expect = 9.0
 Identities = 18/51 (35%), Positives = 26/51 (50%)
 Frame = +1

Query: 181 FIWLVTFVAGFWIFKKIKEWQNLPPGPWGLPIVGYLPFIDRYHPHITLTNL 333
           F+WL     GFW+ + I   + LP   +  P++G LPF   Y   + LT L
Sbjct: 105 FVWLEVAWGGFWVSRVIA--RLLPYILY--PLMGILPF-TMYKYTVILTAL 150


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,839,292
Number of Sequences: 5004
Number of extensions: 64280
Number of successful extensions: 161
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 158
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 161
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 277683324
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)