Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP07_F_J24
(654 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC660.15 |||mRNA cleavage factor complex subunit |Schizosaccha... 135 5e-33
SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr 1|||M... 73 4e-14
SPAC57A7.04c |pabp||mRNA export shuttling protein |Schizosacchar... 64 2e-11
SPBC4F6.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr ... 55 8e-09
SPAC25G10.01 ||SPAC2C4.18|RNA-binding protein|Schizosaccharomyce... 54 2e-08
SPBC18H10.03 |tif35||translation initiation factor eIF3g|Schizos... 52 7e-08
SPAC16E8.06c |nop12||RNA-binding protein Nop12|Schizosaccharomyc... 51 2e-07
SPAC3G6.04 |rnp24||RNA-binding protein Rnp24|Schizosaccharomyces... 50 2e-07
SPAC22E12.02 |||RNA-binding protein|Schizosaccharomyces pombe|ch... 50 4e-07
SPBC23E6.01c ||SPBPJ758.01|RNA-binding protein, rrm type|Schizos... 49 5e-07
SPBC16E9.12c |pab2||poly|Schizosaccharomyces pombe|chr 2|||Manual 48 2e-06
SPBC365.04c |||RNA-binding protein|Schizosaccharomyces pombe|chr... 48 2e-06
SPBC887.05c |cwf29||RNA-binding protein Cwf29|Schizosaccharomyce... 47 3e-06
SPAC19G12.07c |rsd1||RNA-binding protein Rsd1|Schizosaccharomyce... 45 1e-05
SPAC19A8.13 |usp101|snp1|U1 snRNP-associated protein Usp101 |Sch... 44 1e-05
SPBC3B9.11c |ctf1||mRNA cleavage and polyadenylation specificity... 44 2e-05
SPBC17G9.05 |rct1|cyp6|RRM-containing cyclophilin regulating tra... 43 3e-05
SPCC1827.05c |||nucleolar RNA-binding protein NIFK |Schizosaccha... 42 8e-05
SPCC306.04c |set1||histone lysine methyltransferase Set1|Schizos... 39 7e-04
SPAC644.16 |||RNA-binding protein|Schizosaccharomyces pombe|chr ... 39 7e-04
SPBC13A2.01c |||nuclear cap-binding complex small subunit|Schizo... 38 0.001
SPBC18H10.04c |sce3|tif48|translation initiation factor eIF4B|Sc... 36 0.004
SPAC13G7.13c |msa1|SPAC6C3.01c|RNA-binding protein Msa1|Schizosa... 36 0.005
SPAC31G5.01 |sap49|SPAPB1A11.05|RNA-binding protein Sap49|Schizo... 34 0.021
SPBC29A10.02 |spo5|mrb1, mug12, SPBC365.18|meiotic RNA-binding p... 34 0.021
SPAC328.05 |||RNA-binding protein involved in export of mRNAs|Sc... 33 0.027
SPBC660.11 |tcg1|mug187|single-stranded telomeric binding protei... 32 0.063
SPAC2F7.11 |nrd1|msa2|RNA-binding protein Nrd1|Schizosaccharomyc... 31 0.15
SPAC16.02c |srp2||mRNA export factor Srp2|Schizosaccharomyces po... 31 0.15
SPAC3A12.11c |cwf2|prp3|RNA-binding protein Cwf2|Schizosaccharom... 31 0.15
SPCC74.09 |mug24||RNA-binding protein, rrm type|Schizosaccharomy... 31 0.19
SPAC343.07 |mug28||RNA-binding protein Mug28|Schizosaccharomyces... 30 0.25
SPAC17A2.09c |csx1||RNA-binding protein Csx1|Schizosaccharomyces... 30 0.34
SPAC1610.03c |crp79|meu5|poly|Schizosaccharomyces pombe|chr 1|||... 29 0.59
SPCC550.02c |cwf5|ecm2|RNA-binding protein Cwf5|Schizosaccharomy... 29 0.77
SPAC222.09 |seb1||RNA-binding protein Seb1 |Schizosaccharomyces ... 28 1.0
SPBC11C11.08 |srp1||SR family protein Srp1|Schizosaccharomyces p... 28 1.0
SPAC3C7.05c |mug191||alpha-1,6-mannanase |Schizosaccharomyces po... 26 4.1
SPBC56F2.08c |||RNA-binding protein|Schizosaccharomyces pombe|ch... 26 5.5
SPCC1620.14c |snf22|SPCC830.01c|ATP-dependent DNA helicase Snf22... 25 7.2
SPCC594.01 ||SPCC736.16|DUF1769 family protein|Schizosaccharomyc... 25 7.2
SPBC23G7.06c |||conserved eukaryotic protein|Schizosaccharomyces... 25 9.5
>SPBC660.15 |||mRNA cleavage factor complex subunit
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 474
Score = 135 bits (327), Expect = 5e-33
Identities = 63/162 (38%), Positives = 106/162 (65%), Gaps = 3/162 (1%)
Frame = +3
Query: 165 NGDDGYEEPEVHR---KIFIGGLNYKTTDESLKTHFVKWGEIVDVVVMKDPKTKRSRGFG 335
N D+ E +R K+FIGGLN++TTD+SL+ +F ++GE++D VM+D T RSRGFG
Sbjct: 148 NEDNAEETSPFNREDGKMFIGGLNWETTDDSLRDYFEQFGEVLDCTVMRDSTTGRSRGFG 207
Query: 336 FITYSKAHMVDDAQNNRPHKIDGRFVETKRAVARQDIKNPEAGATVKKLFIGGIKDDHEE 515
F+T+ V++ ++ H +DG+ ++ KRA+ R++ + K+F+GG+ D E
Sbjct: 208 FLTFKNPKCVNEVM-SKEHHLDGKIIDPKRAIPREEQEK------TAKMFVGGVPGDCTE 260
Query: 516 EELRQYFSNYGNVQNVSIVTDKNTGKKRGFGFVEFDDYDPVD 641
EE R +F+ +G V + +++ DK+TG+ RGFGFV +++ V+
Sbjct: 261 EEFRNFFNQFGRVLDATLMMDKDTGRPRGFGFVTYENESAVE 302
Score = 65.3 bits (152), Expect = 7e-12
Identities = 31/90 (34%), Positives = 49/90 (54%)
Frame = +3
Query: 183 EEPEVHRKIFIGGLNYKTTDESLKTHFVKWGEIVDVVVMKDPKTKRSRGFGFITYSKAHM 362
EE E K+F+GG+ T+E + F ++G ++D +M D T R RGFGF+TY
Sbjct: 241 EEQEKTAKMFVGGVPGDCTEEEFRNFFNQFGRVLDATLMMDKDTGRPRGFGFVTYENESA 300
Query: 363 VDDAQNNRPHKIDGRFVETKRAVARQDIKN 452
V+ + I G+ VE KRA + +++
Sbjct: 301 VEATMSQPYITIHGKPVEVKRATPKASLRD 330
Score = 54.0 bits (124), Expect = 2e-08
Identities = 22/57 (38%), Positives = 37/57 (64%)
Frame = +3
Query: 477 KLFIGGIKDDHEEEELRQYFSNYGNVQNVSIVTDKNTGKKRGFGFVEFDDYDPVDKV 647
K+FIGG+ + ++ LR YF +G V + +++ D TG+ RGFGF+ F + V++V
Sbjct: 164 KMFIGGLNWETTDDSLRDYFEQFGEVLDCTVMRDSTTGRSRGFGFLTFKNPKCVNEV 220
>SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr
1|||Manual
Length = 500
Score = 72.9 bits (171), Expect = 4e-14
Identities = 45/158 (28%), Positives = 76/158 (48%), Gaps = 12/158 (7%)
Frame = +3
Query: 207 IFIGGLNYKTTDESLKTHFVKWGEIVDVVVMKDPKTKRSRGFGFITYSKAHMVDDA-QNN 383
+F+G L++ D+ L F ++G IV V+ D ++ RS+G+G++ + A N
Sbjct: 265 VFVGRLSWNVDDQWLGQEFEEYGTIVGARVIMDGQSGRSKGYGYVDFETPEAAKAAVAAN 324
Query: 384 RPHKIDGRFVE----TKRAVARQDIKNPEAGATVKKL-------FIGGIKDDHEEEELRQ 530
+IDGR V R Q AG +L F+G + + E++L
Sbjct: 325 GTKEIDGRMVNLDLSNPRPANPQPYAQQRAGNFGDQLSEPSDTVFVGNLSFNATEDDLST 384
Query: 531 YFSNYGNVQNVSIVTDKNTGKKRGFGFVEFDDYDPVDK 644
F G++Q++ + TD +G+ +GFG+V F D D K
Sbjct: 385 AFGGCGDIQSIRLPTDPQSGRLKGFGYVTFSDIDSAKK 422
Score = 49.6 bits (113), Expect = 4e-07
Identities = 24/80 (30%), Positives = 41/80 (51%)
Frame = +3
Query: 168 GDDGYEEPEVHRKIFIGGLNYKTTDESLKTHFVKWGEIVDVVVMKDPKTKRSRGFGFITY 347
G+ G + E +F+G L++ T++ L T F G+I + + DP++ R +GFG++T+
Sbjct: 355 GNFGDQLSEPSDTVFVGNLSFNATEDDLSTAFGGCGDIQSIRLPTDPQSGRLKGFGYVTF 414
Query: 348 SKAHMVDDAQNNRPHKIDGR 407
S H I GR
Sbjct: 415 SDIDSAKKCVEMNGHFIAGR 434
>SPAC57A7.04c |pabp||mRNA export shuttling protein
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 653
Score = 63.7 bits (148), Expect = 2e-11
Identities = 43/159 (27%), Positives = 82/159 (51%), Gaps = 13/159 (8%)
Frame = +3
Query: 207 IFIGGLNYKTTDESLKTHFVKWGEIVDVVVMKDPKTKRSRGFGFITYSK---AHMVDDAQ 377
++I L+ + T++ F ++GEI + ++KD K RGFGF+ Y+ A D
Sbjct: 263 VYIKNLDTEITEQEFSDLFGQFGEITSLSLVKDQNDK-PRGFGFVNYANHECAQKAVDEL 321
Query: 378 NNRPHKIDGRFV--ETKRAVARQDIKNPEAGATVKK--------LFIGGIKDDHEEEELR 527
N++ +K +V K+ ++++ ++K LFI ++D+ ++E L+
Sbjct: 322 NDKEYKGKKLYVGRAQKKHEREEELRKRYEQMKLEKMNKYQGVNLFIKNLQDEVDDERLK 381
Query: 528 QYFSNYGNVQNVSIVTDKNTGKKRGFGFVEFDDYDPVDK 644
FS +G + + I+TD+ GK +GFGFV + + +K
Sbjct: 382 AEFSAFGTITSAKIMTDEQ-GKSKGFGFVCYTTPEEANK 419
Score = 52.0 bits (119), Expect = 7e-08
Identities = 35/153 (22%), Positives = 72/153 (47%), Gaps = 7/153 (4%)
Frame = +3
Query: 207 IFIGGLNYKTTDESLKTHFVKWGEIVDVVVMKDPKTKRSRGFGFITYSKAHMVDDAQNNR 386
+FI L+ +++L F +G+I+ V D + ++G+GF+ + ++ N
Sbjct: 170 VFIKNLDPAIDNKALHDTFSAFGKILSCKVAVD-ELGNAKGYGFVHFDSV----ESANAA 224
Query: 387 PHKIDGRFVETKRAVARQDIKNPEAGATVKKL-------FIGGIKDDHEEEELRQYFSNY 545
++G + K+ + E + V+ L +I + + E+E F +
Sbjct: 225 IEHVNGMLLNDKKVYVGHHVSRRERQSKVEALKANFTNVYIKNLDTEITEQEFSDLFGQF 284
Query: 546 GNVQNVSIVTDKNTGKKRGFGFVEFDDYDPVDK 644
G + ++S+V D+N K RGFGFV + +++ K
Sbjct: 285 GEITSLSLVKDQN-DKPRGFGFVNYANHECAQK 316
Score = 45.6 bits (103), Expect = 6e-06
Identities = 29/143 (20%), Positives = 65/143 (45%), Gaps = 1/143 (0%)
Frame = +3
Query: 207 IFIGGLNYKTTDESLKTHFVKWGEIVDVVVMKDPKTKRSRGFGFITYSKAHMVDDAQNNR 386
+++G L+ T+ L F G + + V +D T+RS G+ ++ + H ++D +
Sbjct: 82 LYVGELDPSVTEAMLFELFNSIGPVASIRVCRDAVTRRSLGYAYVNF---HNMEDGE-KA 137
Query: 387 PHKIDGRFVETKRAVARQDIKNPEAGAT-VKKLFIGGIKDDHEEEELRQYFSNYGNVQNV 563
+++ ++ + ++P +FI + + + L FS +G + +
Sbjct: 138 LDELNYTLIKGRPCRIMWSQRDPSLRKMGTGNVFIKNLDPAIDNKALHDTFSAFGKILSC 197
Query: 564 SIVTDKNTGKKRGFGFVEFDDYD 632
+ D+ G +G+GFV FD +
Sbjct: 198 KVAVDE-LGNAKGYGFVHFDSVE 219
>SPBC4F6.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 674
Score = 55.2 bits (127), Expect = 8e-09
Identities = 45/155 (29%), Positives = 74/155 (47%), Gaps = 15/155 (9%)
Frame = +3
Query: 207 IFIGGLNYKTTDESLKTHFVKWGEIVDVVVMKDPKTKRSRGFGFITYSKAHMVDDAQNN- 383
+F+ L ++T + L F G I VV+ +P+T +RG+GF+T+S M++DAQ
Sbjct: 7 LFVRNLAFQTKQDDLTNFFSDVGPIKHAVVVTNPETGENRGYGFVTFS---MLEDAQRAA 63
Query: 384 ---RPHKIDGRFVETKRAVARQDIK-NPEAGATVKK---------LFIGGIK-DDHEEEE 521
+ K+ GR + A R+ + + + VKK L I + + +
Sbjct: 64 KELKNKKLHGRILRLDFATPRKRSEVDTDQNKAVKKTIRQDNRPRLIIRNLPWSIKKPQH 123
Query: 522 LRQYFSNYGNVQNVSIVTDKNTGKKRGFGFVEFDD 626
L +FS +G V+ + I T K G+ GF FV D
Sbjct: 124 LEPHFSKFGKVREIKIPT-KGGGRMCGFAFVWMKD 157
Score = 40.7 bits (91), Expect = 2e-04
Identities = 17/47 (36%), Positives = 29/47 (61%)
Frame = +3
Query: 207 IFIGGLNYKTTDESLKTHFVKWGEIVDVVVMKDPKTKRSRGFGFITY 347
+F+ L ++ T++ L HF ++G + ++KDP T RS G GFI +
Sbjct: 279 VFVRNLLFECTEQELYNHFRQFGPLAYAKLVKDPATDRSLGRGFIKF 325
Score = 30.7 bits (66), Expect = 0.19
Identities = 13/47 (27%), Positives = 25/47 (53%)
Frame = +3
Query: 480 LFIGGIKDDHEEEELRQYFSNYGNVQNVSIVTDKNTGKKRGFGFVEF 620
+F+ + + E+EL +F +G + +V D T + G GF++F
Sbjct: 279 VFVRNLLFECTEQELYNHFRQFGPLAYAKLVKDPATDRSLGRGFIKF 325
>SPAC25G10.01 ||SPAC2C4.18|RNA-binding protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 297
Score = 53.6 bits (123), Expect = 2e-08
Identities = 27/91 (29%), Positives = 50/91 (54%), Gaps = 1/91 (1%)
Frame = +3
Query: 159 PQNGDDGYEEPEVHRKIFIGGLNYKTTDESLKTHFVKWGEIVDVVVMKDPKTKRSRGFGF 338
PQ+ +G E + +F+ G+ + ++ L+ F K+G + V +M++P TK SRGFGF
Sbjct: 89 PQSAPEGSEN--LGNDLFVSGIASRMQEDELQQIFSKFGTVTHVRIMREPVTKASRGFGF 146
Query: 339 ITYSKAHMVDDAQNN-RPHKIDGRFVETKRA 428
+++S A +N + GR + ++A
Sbjct: 147 LSFSTVEEATSAIDNLNSQEFYGRVLNVQKA 177
Score = 47.2 bits (107), Expect = 2e-06
Identities = 21/47 (44%), Positives = 30/47 (63%)
Frame = +3
Query: 480 LFIGGIKDDHEEEELRQYFSNYGNVQNVSIVTDKNTGKKRGFGFVEF 620
LF+ GI +E+EL+Q FS +G V +V I+ + T RGFGF+ F
Sbjct: 103 LFVSGIASRMQEDELQQIFSKFGTVTHVRIMREPVTKASRGFGFLSF 149
>SPBC18H10.03 |tif35||translation initiation factor
eIF3g|Schizosaccharomyces pombe|chr 2|||Manual
Length = 282
Score = 52.0 bits (119), Expect = 7e-08
Identities = 22/51 (43%), Positives = 30/51 (58%)
Frame = +3
Query: 480 LFIGGIKDDHEEEELRQYFSNYGNVQNVSIVTDKNTGKKRGFGFVEFDDYD 632
L + + DD EEELR F +G +Q V + DK TG+ +GF FV + D D
Sbjct: 204 LRVTNLSDDTREEELRDLFRRFGGIQRVYLAKDKETGRAKGFAFVSYYDRD 254
>SPAC16E8.06c |nop12||RNA-binding protein Nop12|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 438
Score = 50.8 bits (116), Expect = 2e-07
Identities = 24/70 (34%), Positives = 39/70 (55%)
Frame = +3
Query: 444 IKNPEAGATVKKLFIGGIKDDHEEEELRQYFSNYGNVQNVSIVTDKNTGKKRGFGFVEFD 623
+ +P T + +F+G + + EEE L +YF + G++ V IV D T +GF +++F
Sbjct: 260 VSHPMPQDTKRCVFVGNLAFEAEEEPLWRYFGDCGSIDYVRIVRDPKTNLGKGFAYIQFK 319
Query: 624 DYDPVDKVCL 653
D VDK L
Sbjct: 320 DTMGVDKALL 329
Score = 44.4 bits (100), Expect = 1e-05
Identities = 25/80 (31%), Positives = 41/80 (51%), Gaps = 1/80 (1%)
Frame = +3
Query: 192 EVHRKIFIGGLNYKTTDESLKTHFVKWGEIVDVVVMKDPKTKRSRGFGFITYSKAHMVDD 371
+ R +F+G L ++ +E L +F G I V +++DPKT +GF +I + VD
Sbjct: 267 DTKRCVFVGNLAFEAEEEPLWRYFGDCGSIDYVRIVRDPKTNLGKGFAYIQFKDTMGVDK 326
Query: 372 AQNNRPHKI-DGRFVETKRA 428
A K+ +GR + RA
Sbjct: 327 ALLLNEKKMPEGRTLRIMRA 346
>SPAC3G6.04 |rnp24||RNA-binding protein Rnp24|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 369
Score = 50.4 bits (115), Expect = 2e-07
Identities = 19/51 (37%), Positives = 35/51 (68%)
Frame = +3
Query: 480 LFIGGIKDDHEEEELRQYFSNYGNVQNVSIVTDKNTGKKRGFGFVEFDDYD 632
LF+G + + + +L+++F G ++ V ++T ++TGK +GFGFV+F D D
Sbjct: 230 LFVGNLDFETTDADLKEHFGQVGQIRRVRLMTFEDTGKCKGFGFVDFPDID 280
Score = 44.8 bits (101), Expect = 1e-05
Identities = 19/47 (40%), Positives = 31/47 (65%)
Frame = +3
Query: 207 IFIGGLNYKTTDESLKTHFVKWGEIVDVVVMKDPKTKRSRGFGFITY 347
+F+G L+++TTD LK HF + G+I V +M T + +GFGF+ +
Sbjct: 230 LFVGNLDFETTDADLKEHFGQVGQIRRVRLMTFEDTGKCKGFGFVDF 276
>SPAC22E12.02 |||RNA-binding protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 219
Score = 49.6 bits (113), Expect = 4e-07
Identities = 23/52 (44%), Positives = 32/52 (61%)
Frame = +3
Query: 477 KLFIGGIKDDHEEEELRQYFSNYGNVQNVSIVTDKNTGKKRGFGFVEFDDYD 632
+LF+G + +D +E L Q FS Y ++ +V D+ GK RGFGFV F D D
Sbjct: 31 RLFVGNLGNDVNDESLYQAFSEYPSLVKTKVVRDRE-GKTRGFGFVSFKDSD 81
Score = 42.3 bits (95), Expect = 6e-05
Identities = 28/88 (31%), Positives = 46/88 (52%), Gaps = 1/88 (1%)
Frame = +3
Query: 198 HRKIFIGGLNYKTTDESLKTHFVKWGEIVDVVVMKDPKTKRSRGFGFITYSKAHMVDDAQ 377
H ++F+G L DESL F ++ +V V++D + K +RGFGF+++ + A
Sbjct: 29 HFRLFVGNLGNDVNDESLYQAFSEYPSLVKTKVVRDREGK-TRGFGFVSFKDSDQFLKAW 87
Query: 378 NNRPHK-IDGRFVETKRAVARQDIKNPE 458
+ K I R V+ RA + D+K E
Sbjct: 88 REKNGKYIGSRPVKLSRATS--DVKPNE 113
>SPBC23E6.01c ||SPBPJ758.01|RNA-binding protein, rrm
type|Schizosaccharomyces pombe|chr 2|||Manual
Length = 473
Score = 49.2 bits (112), Expect = 5e-07
Identities = 33/143 (23%), Positives = 66/143 (46%), Gaps = 3/143 (2%)
Frame = +3
Query: 207 IFIGGLNYKTTDESLKTHFVKWGEIVDVVVMKDPKTKRSRGFGFITYSKAHMVDDAQ--N 380
+++G L T+ ++ + G+ V V ++++ T + G+ F+ ++ H A N
Sbjct: 95 LWMGELEPWVTEAFIQQVWNTLGKAVKVKLIRNRYTGMNAGYCFVEFASPHEASSAMSMN 154
Query: 381 NRPHKIDGRFVETKRAVARQDIKNPEAGATVKKLFIGGIKDDHEEEELRQYF-SNYGNVQ 557
N+P + A + + A+ +F+G + + E ++ F S Y + +
Sbjct: 155 NKPIPGTNHLFKLNWASGGGLREKSISKASEYSIFVGDLSPNVNEFDVYSLFASRYNSCK 214
Query: 558 NVSIVTDKNTGKKRGFGFVEFDD 626
+ I+TD T RG+GFV F D
Sbjct: 215 SAKIMTDPQTNVSRGYGFVRFTD 237
Score = 37.1 bits (82), Expect = 0.002
Identities = 40/164 (24%), Positives = 66/164 (40%), Gaps = 26/164 (15%)
Frame = +3
Query: 207 IFIGGLNYKTTDESLKTHFV-KWGEIVDVVVMKDPKTKRSRGFGFITYSK--------AH 359
IF+G L+ + + + F ++ +M DP+T SRG+GF+ ++ A
Sbjct: 188 IFVGDLSPNVNEFDVYSLFASRYNSCKSAKIMTDPQTNVSRGYGFVRFTDENDQKSALAE 247
Query: 360 MVDDAQNNRPHKIDGRFVETKRAVARQ----DIKNPEAG-------------ATVKKLFI 488
M +RP ++ ++K V + P G +F+
Sbjct: 248 MQGQICGDRPIRVGLATPKSKAHVFSPVNVVPVSMPPVGFYSAAQPVPQFADTANSTVFV 307
Query: 489 GGIKDDHEEEELRQYFSNYGNVQNVSIVTDKNTGKKRGFGFVEF 620
GG+ EEEL+ F N+G + V I K G GFV+F
Sbjct: 308 GGLSKFVSEEELKYLFQNFGEIVYVKIPPGK------GCGFVQF 345
Score = 30.7 bits (66), Expect = 0.19
Identities = 19/58 (32%), Positives = 29/58 (50%)
Frame = +3
Query: 207 IFIGGLNYKTTDESLKTHFVKWGEIVDVVVMKDPKTKRSRGFGFITYSKAHMVDDAQN 380
+F+GGL+ ++E LK F +GEIV V K +G GF+ + + A N
Sbjct: 305 VFVGGLSKFVSEEELKYLFQNFGEIVYV------KIPPGKGCGFVQFVNRQSAEIAIN 356
>SPBC16E9.12c |pab2||poly|Schizosaccharomyces pombe|chr 2|||Manual
Length = 166
Score = 47.6 bits (108), Expect = 2e-06
Identities = 18/61 (29%), Positives = 37/61 (60%)
Frame = +3
Query: 444 IKNPEAGATVKKLFIGGIKDDHEEEELRQYFSNYGNVQNVSIVTDKNTGKKRGFGFVEFD 623
++N + + +++G + EEL+ +F++ G+V V+I+ DK TG +GF ++EF
Sbjct: 45 LRNDKESIDAQSVYVGNVDYSVTPEELQSHFASCGSVNRVTILCDKFTGHPKGFAYIEFS 104
Query: 624 D 626
+
Sbjct: 105 E 105
Score = 45.2 bits (102), Expect = 8e-06
Identities = 17/58 (29%), Positives = 34/58 (58%)
Frame = +3
Query: 201 RKIFIGGLNYKTTDESLKTHFVKWGEIVDVVVMKDPKTKRSRGFGFITYSKAHMVDDA 374
+ +++G ++Y T E L++HF G + V ++ D T +GF +I +S+ +V +A
Sbjct: 55 QSVYVGNVDYSVTPEELQSHFASCGSVNRVTILCDKFTGHPKGFAYIEFSEPSLVPNA 112
>SPBC365.04c |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 233
Score = 47.6 bits (108), Expect = 2e-06
Identities = 20/47 (42%), Positives = 30/47 (63%)
Frame = +3
Query: 480 LFIGGIKDDHEEEELRQYFSNYGNVQNVSIVTDKNTGKKRGFGFVEF 620
LF+G + D E L+ +F G V +V I TDK +G+++G+ FVEF
Sbjct: 94 LFVGNLPKDSSVETLQLHFKRAGQVPSVRIPTDKTSGRQKGYAFVEF 140
Score = 34.7 bits (76), Expect = 0.012
Identities = 13/47 (27%), Positives = 28/47 (59%)
Frame = +3
Query: 207 IFIGGLNYKTTDESLKTHFVKWGEIVDVVVMKDPKTKRSRGFGFITY 347
+F+G L ++ E+L+ HF + G++ V + D + R +G+ F+ +
Sbjct: 94 LFVGNLPKDSSVETLQLHFKRAGQVPSVRIPTDKTSGRQKGYAFVEF 140
>SPBC887.05c |cwf29||RNA-binding protein Cwf29|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 217
Score = 46.8 bits (106), Expect = 3e-06
Identities = 17/49 (34%), Positives = 33/49 (67%)
Frame = +3
Query: 480 LFIGGIKDDHEEEELRQYFSNYGNVQNVSIVTDKNTGKKRGFGFVEFDD 626
++IG + D E+++ FS +G ++++V DK TGK +GF F++++D
Sbjct: 33 IYIGNLDFDLNEDDILCVFSEFGEPVDINLVRDKETGKSKGFAFLKYED 81
Score = 41.9 bits (94), Expect = 8e-05
Identities = 16/47 (34%), Positives = 32/47 (68%)
Frame = +3
Query: 207 IFIGGLNYKTTDESLKTHFVKWGEIVDVVVMKDPKTKRSRGFGFITY 347
I+IG L++ ++ + F ++GE VD+ +++D +T +S+GF F+ Y
Sbjct: 33 IYIGNLDFDLNEDDILCVFSEFGEPVDINLVRDKETGKSKGFAFLKY 79
>SPAC19G12.07c |rsd1||RNA-binding protein Rsd1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 604
Score = 44.8 bits (101), Expect = 1e-05
Identities = 32/155 (20%), Positives = 70/155 (45%), Gaps = 9/155 (5%)
Frame = +3
Query: 183 EEPEVHRKIFIGGLNYKTTDESLKTHFVKWGEIVDVVVMKDPKTKRSRGFGFITYSKAHM 362
EE R +F+ L + T L F + G + D +++D + RS+G ++ +
Sbjct: 234 EEERDRRTVFVSQLANRLTSRELYDFFEQAGPVRDAQIVRDKISGRSKGVAYVEFCHEDS 293
Query: 363 VDDAQNNRPHKIDGRFVETKRAVARQDIKNPEAGATVK---------KLFIGGIKDDHEE 515
V A ++ G V + A ++ K EA + +L + I + +
Sbjct: 294 VQAAIALSGKRLLGLPVIVQLTEAEKNRKAREAAELARAASAEIPFHRLCVSNIHFNLTD 353
Query: 516 EELRQYFSNYGNVQNVSIVTDKNTGKKRGFGFVEF 620
E+++ F +G+++ V + D + + +GFG++++
Sbjct: 354 EDVKAIFEPFGDIEFVHLQRD-DQNRSKGFGYIQY 387
>SPAC19A8.13 |usp101|snp1|U1 snRNP-associated protein Usp101
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 261
Score = 44.4 bits (100), Expect = 1e-05
Identities = 17/54 (31%), Positives = 32/54 (59%)
Frame = +3
Query: 462 GATVKKLFIGGIKDDHEEEELRQYFSNYGNVQNVSIVTDKNTGKKRGFGFVEFD 623
G K +F+ + D +E ++ + F+ YG ++ + +V +K TGK G+ FV F+
Sbjct: 96 GDPYKTMFLSRLSYDTKESDIEREFTRYGPIERIRVVRNKVTGKSMGYAFVVFE 149
>SPBC3B9.11c |ctf1||mRNA cleavage and polyadenylation specificity
factor complex subunit Ctf1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 363
Score = 44.0 bits (99), Expect = 2e-05
Identities = 18/49 (36%), Positives = 29/49 (59%)
Frame = +3
Query: 480 LFIGGIKDDHEEEELRQYFSNYGNVQNVSIVTDKNTGKKRGFGFVEFDD 626
+F+G I D E+++ + F+ G V+ +V D TG +G+GF EF D
Sbjct: 9 VFVGNIPYDVSEQQMTEIFNQVGPVKTFKLVLDPETGSGKGYGFCEFFD 57
Score = 31.9 bits (69), Expect = 0.083
Identities = 11/47 (23%), Positives = 26/47 (55%)
Frame = +3
Query: 207 IFIGGLNYKTTDESLKTHFVKWGEIVDVVVMKDPKTKRSRGFGFITY 347
+F+G + Y +++ + F + G + ++ DP+T +G+GF +
Sbjct: 9 VFVGNIPYDVSEQQMTEIFNQVGPVKTFKLVLDPETGSGKGYGFCEF 55
>SPBC17G9.05 |rct1|cyp6|RRM-containing cyclophilin regulating
transcription Rct1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 432
Score = 43.2 bits (97), Expect = 3e-05
Identities = 17/55 (30%), Positives = 32/55 (58%)
Frame = +3
Query: 480 LFIGGIKDDHEEEELRQYFSNYGNVQNVSIVTDKNTGKKRGFGFVEFDDYDPVDK 644
LF+ + ++E+L FS +G + + ++ DK TG + F+EFD+ + V+K
Sbjct: 246 LFVCKLNPVTQDEDLELIFSRFGKIISCQVIRDKETGDSLQYAFIEFDNKESVEK 300
>SPCC1827.05c |||nucleolar RNA-binding protein NIFK
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 276
Score = 41.9 bits (94), Expect = 8e-05
Identities = 16/56 (28%), Positives = 32/56 (57%)
Frame = +3
Query: 480 LFIGGIKDDHEEEELRQYFSNYGNVQNVSIVTDKNTGKKRGFGFVEFDDYDPVDKV 647
L++G + E+++R YFS +G V + + ++ TG + + F+EF+ D + V
Sbjct: 107 LYVGRLPHGFYEKQMRMYFSQFGPVLRLRMSRNRKTGSSKHYAFIEFESLDVANVV 162
>SPCC306.04c |set1||histone lysine methyltransferase
Set1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 920
Score = 38.7 bits (86), Expect = 7e-04
Identities = 18/65 (27%), Positives = 34/65 (52%)
Frame = +3
Query: 189 PEVHRKIFIGGLNYKTTDESLKTHFVKWGEIVDVVVMKDPKTKRSRGFGFITYSKAHMVD 368
PE ++F+ ++ T E L+ HF +GE+ D+ + +P T S G I++ K +
Sbjct: 90 PEPPTQVFVSNISPLVTSEQLRYHFKSFGEVFDLDLKLNPYTGTSLGLCCISFDKRSSIS 149
Query: 369 DAQNN 383
A ++
Sbjct: 150 VAAHS 154
>SPAC644.16 |||RNA-binding protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 422
Score = 38.7 bits (86), Expect = 7e-04
Identities = 15/49 (30%), Positives = 29/49 (59%)
Frame = +3
Query: 480 LFIGGIKDDHEEEELRQYFSNYGNVQNVSIVTDKNTGKKRGFGFVEFDD 626
+++G I + EE++ F G V++ +V D +G+ +G+GF E+ D
Sbjct: 7 VYVGNIPYEMAEEQVIDIFKQSGPVKSFQLVIDPESGQPKGYGFCEYHD 55
Score = 31.5 bits (68), Expect = 0.11
Identities = 11/47 (23%), Positives = 27/47 (57%)
Frame = +3
Query: 207 IFIGGLNYKTTDESLKTHFVKWGEIVDVVVMKDPKTKRSRGFGFITY 347
+++G + Y+ +E + F + G + ++ DP++ + +G+GF Y
Sbjct: 7 VYVGNIPYEMAEEQVIDIFKQSGPVKSFQLVIDPESGQPKGYGFCEY 53
>SPBC13A2.01c |||nuclear cap-binding complex small
subunit|Schizosaccharomyces pombe|chr 2|||Manual
Length = 182
Score = 37.9 bits (84), Expect = 0.001
Identities = 17/47 (36%), Positives = 28/47 (59%)
Frame = +3
Query: 207 IFIGGLNYKTTDESLKTHFVKWGEIVDVVVMKDPKTKRSRGFGFITY 347
+++G L++ TT+E + F K GEI +++ D TK GF F+ Y
Sbjct: 34 VYVGNLSFYTTEEQIYALFSKCGEIRRIIMGVDRFTKTPCGFCFVEY 80
Score = 33.5 bits (73), Expect = 0.027
Identities = 18/72 (25%), Positives = 37/72 (51%), Gaps = 1/72 (1%)
Frame = +3
Query: 435 RQDIKNPEAGATVKKLFIGGIKDDHEEEELRQYFSNYGNVQNVSIVTDKNTGKKRGFGFV 614
+ D++ +A +++G + EE++ FS G ++ + + D+ T GF FV
Sbjct: 19 KNDLRALDAVKQSNCVYVGNLSFYTTEEQIYALFSKCGEIRRIIMGVDRFTKTPCGFCFV 78
Query: 615 E-FDDYDPVDKV 647
E F++ D +D +
Sbjct: 79 EYFENQDALDSL 90
>SPBC18H10.04c |sce3|tif48|translation initiation factor
eIF4B|Schizosaccharomyces pombe|chr 2|||Manual
Length = 388
Score = 36.3 bits (80), Expect = 0.004
Identities = 25/83 (30%), Positives = 43/83 (51%), Gaps = 6/83 (7%)
Frame = +3
Query: 213 IGGLNYKTTDESLKTHFVKWGE-IVDVVVMKDPKTKRSRGFGFITYSKAHMVDDAQNNRP 389
+G L++ T+ L F GE + + ++ DP T+RSRGFG++ + A + A
Sbjct: 98 VGNLSFDLTENDLGDFF---GEGVTSIRLVIDPLTERSRGFGYVEFETADTLSAALALSG 154
Query: 390 HKIDGRFV-----ETKRAVARQD 443
+ GR V E +R+ AR++
Sbjct: 155 EDLMGRPVRITVAEPRRSFAREE 177
Score = 35.9 bits (79), Expect = 0.005
Identities = 17/49 (34%), Positives = 27/49 (55%)
Frame = +3
Query: 486 IGGIKDDHEEEELRQYFSNYGNVQNVSIVTDKNTGKKRGFGFVEFDDYD 632
+G + D E +L +F V ++ +V D T + RGFG+VEF+ D
Sbjct: 98 VGNLSFDLTENDLGDFFGE--GVTSIRLVIDPLTERSRGFGYVEFETAD 144
>SPAC13G7.13c |msa1|SPAC6C3.01c|RNA-binding protein
Msa1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 533
Score = 35.9 bits (79), Expect = 0.005
Identities = 23/86 (26%), Positives = 41/86 (47%), Gaps = 5/86 (5%)
Frame = +3
Query: 207 IFIGGLNYKTTDESL----KTHFVKWGEIVDVVVMKDPKTKRSRGFGFITYSKAHMVDDA 374
+F+ LN ++E L K +F +WG ++ V V+KD R + F+ + A
Sbjct: 81 LFVASLNSSRSEEELTATVKDYFQQWGPLLHVKVLKD---WLQRPYSFVQFQNTDDASKA 137
Query: 375 QNNRPHKI-DGRFVETKRAVARQDIK 449
+ + I DGR + +RA + I+
Sbjct: 138 LSEAQNTILDGRHIRIERAKVNRTIR 163
Score = 31.5 bits (68), Expect = 0.11
Identities = 21/73 (28%), Positives = 34/73 (46%), Gaps = 6/73 (8%)
Frame = +3
Query: 444 IKNPEA--GATVKKLFIGGIKDDHEEEELRQ----YFSNYGNVQNVSIVTDKNTGKKRGF 605
+ NP + G V LF+ + EEEL YF +G + +V ++ D +R +
Sbjct: 67 VLNPSSVRGKPVACLFVASLNSSRSEEELTATVKDYFQQWGPLLHVKVLKD---WLQRPY 123
Query: 606 GFVEFDDYDPVDK 644
FV+F + D K
Sbjct: 124 SFVQFQNTDDASK 136
>SPAC31G5.01 |sap49|SPAPB1A11.05|RNA-binding protein
Sap49|Schizosaccharomyces pombe|chr 1|||Manual
Length = 335
Score = 33.9 bits (74), Expect = 0.021
Identities = 24/99 (24%), Positives = 41/99 (41%), Gaps = 8/99 (8%)
Frame = +3
Query: 207 IFIGGLNYKTTDESLKTHFVKWGEIVDVVVMKDPKTKRSRGFGFITYSKAHMVD---DAQ 377
+F+G L+ + L F G++V + + RS+G+GF++Y D +A
Sbjct: 101 LFVGNLDPLVDERVLYDTFSALGQLVKAPQVARDENGRSKGYGFVSYDSFETADAAIEAM 160
Query: 378 N-----NRPHKIDGRFVETKRAVARQDIKNPEAGATVKK 479
N N+P + F + DI + A KK
Sbjct: 161 NNQFLMNKPITVSYAFKREGKGERHGDIAERKLAAAAKK 199
>SPBC29A10.02 |spo5|mrb1, mug12, SPBC365.18|meiotic RNA-binding
protein 1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 567
Score = 33.9 bits (74), Expect = 0.021
Identities = 17/67 (25%), Positives = 32/67 (47%)
Frame = +3
Query: 153 MRPQNGDDGYEEPEVHRKIFIGGLNYKTTDESLKTHFVKWGEIVDVVVMKDPKTKRSRGF 332
M N E R ++I GL T+DE+L + ++G++ + D +T +G+
Sbjct: 280 MSHDNKKSNMESTSRTRNVYIRGLPPNTSDENLLLYTNRFGKVSSSKAIIDMETNLCKGY 339
Query: 333 GFITYSK 353
GF + +
Sbjct: 340 GFACFEE 346
>SPAC328.05 |||RNA-binding protein involved in export of
mRNAs|Schizosaccharomyces pombe|chr 1|||Manual
Length = 434
Score = 33.5 bits (73), Expect = 0.027
Identities = 15/47 (31%), Positives = 27/47 (57%)
Frame = +3
Query: 207 IFIGGLNYKTTDESLKTHFVKWGEIVDVVVMKDPKTKRSRGFGFITY 347
I++G L + T+D +L F G ++ + +P T RS+GFG + +
Sbjct: 282 IYVGNLPWATSDRNLLDLFTDIGSVIRARIAYEP-TGRSKGFGVVQF 327
Score = 30.7 bits (66), Expect = 0.19
Identities = 34/143 (23%), Positives = 60/143 (41%), Gaps = 8/143 (5%)
Frame = +3
Query: 222 LNYKTTDESLKTHFVKWGEIVDVVVMKDPKTKRSRGFGFITYSKAHMVDDAQNNRPHKID 401
L Y + LK F + G ++ + + + RSRG G + S A H D
Sbjct: 190 LPYNVRWQDLKDLFRQAGSVIRADIQMNQEG-RSRGIGIVVMSSMKEAMHAIQML-HNTD 247
Query: 402 --GRFVETKR-AVARQDIKNP-----EAGATVKKLFIGGIKDDHEEEELRQYFSNYGNVQ 557
GR +E + A I++ G +++G + + L F++ G+V
Sbjct: 248 FMGRTLEVRLDRFAHHKIEDLVYHAYPHGPCSDCIYVGNLPWATSDRNLLDLFTDIGSVI 307
Query: 558 NVSIVTDKNTGKKRGFGFVEFDD 626
I + TG+ +GFG V+F++
Sbjct: 308 RARIAYEP-TGRSKGFGVVQFEN 329
Score = 28.7 bits (61), Expect = 0.77
Identities = 15/61 (24%), Positives = 31/61 (50%)
Frame = +3
Query: 174 DGYEEPEVHRKIFIGGLNYKTTDESLKTHFVKWGEIVDVVVMKDPKTKRSRGFGFITYSK 353
+G + + R++++G L+Y+ LK + G +++ ++ P S+G I YS
Sbjct: 57 NGQKYTQQERRVYVGNLSYQVRWFELKEFMGQVGNVLNCEILNLP-NGLSKGCAIIEYST 115
Query: 354 A 356
A
Sbjct: 116 A 116
Score = 27.1 bits (57), Expect = 2.4
Identities = 12/49 (24%), Positives = 25/49 (51%)
Frame = +3
Query: 474 KKLFIGGIKDDHEEEELRQYFSNYGNVQNVSIVTDKNTGKKRGFGFVEF 620
+++++G + EL+++ GNV N I+ N G +G +E+
Sbjct: 66 RRVYVGNLSYQVRWFELKEFMGQVGNVLNCEILNLPN-GLSKGCAIIEY 113
>SPBC660.11 |tcg1|mug187|single-stranded telomeric binding protein
Tgc1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 348
Score = 32.3 bits (70), Expect = 0.063
Identities = 24/99 (24%), Positives = 43/99 (43%), Gaps = 4/99 (4%)
Frame = +3
Query: 360 MVDDAQNNRPHKIDGRFVETKRAVARQDIKNPEAGATVKKLFIGGIKDDHEEEELRQYFS 539
+ +A N +++ A A Q P A ++F+G + ++ E+R F
Sbjct: 7 VTQNAPNTVQDQVEASVDAAVHASAEQS-NTPAQQADDFRVFVGRLSTSTKKSEIRSLFE 65
Query: 540 NYGNVQNVSIVTDK-NTGKK---RGFGFVEFDDYDPVDK 644
G V+ V+I + G + G FV F++ + VDK
Sbjct: 66 TVGTVRKVTIPFRRVRRGTRLVPSGIAFVTFNNQEDVDK 104
Score = 29.1 bits (62), Expect = 0.59
Identities = 26/104 (25%), Positives = 45/104 (43%), Gaps = 13/104 (12%)
Frame = +3
Query: 186 EPEVHRKIFIGGLNYKTTDESLKTHFVKWGEI-VDVVVMKDP-----------KTKRSRG 329
+P I++ GL+ T+E LK F + + V P + +R RG
Sbjct: 200 KPLPPNSIYVSGLSVTLTNEGLKEMFDAYNPTRARIAVRSLPPYIIRRIKLRGEQRRGRG 259
Query: 330 FGFITYSKAHMVDDA-QNNRPHKIDGRFVETKRAVARQDIKNPE 458
FGF++++ A A + ++ + K AV R+D +N E
Sbjct: 260 FGFVSFANAEDQSRAIEEMNGKQVGDLTLVVKSAVFREDKQNDE 303
>SPAC2F7.11 |nrd1|msa2|RNA-binding protein Nrd1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 529
Score = 31.1 bits (67), Expect = 0.15
Identities = 12/43 (27%), Positives = 27/43 (62%)
Frame = +3
Query: 456 EAGATVKKLFIGGIKDDHEEEELRQYFSNYGNVQNVSIVTDKN 584
++GA + +F+G + + E+E+R+ +G + + IVT++N
Sbjct: 201 QSGAC-RNVFLGNLPNGITEDEIREDLEPFGPIDQIKIVTERN 242
Score = 30.7 bits (66), Expect = 0.19
Identities = 12/42 (28%), Positives = 22/42 (52%)
Frame = +3
Query: 459 AGATVKKLFIGGIKDDHEEEELRQYFSNYGNVQNVSIVTDKN 584
AG + ++IG D E L++ F +G ++ V+ +KN
Sbjct: 409 AGGASRNIYIGNADDSLTIERLKEDFEEFGEIEYVNFFREKN 450
Score = 25.0 bits (52), Expect = 9.5
Identities = 12/27 (44%), Positives = 16/27 (59%)
Frame = +3
Query: 201 RKIFIGGLNYKTTDESLKTHFVKWGEI 281
R I+IG + T E LK F ++GEI
Sbjct: 414 RNIYIGNADDSLTIERLKEDFEEFGEI 440
>SPAC16.02c |srp2||mRNA export factor Srp2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 365
Score = 31.1 bits (67), Expect = 0.15
Identities = 15/50 (30%), Positives = 25/50 (50%)
Frame = +3
Query: 477 KLFIGGIKDDHEEEELRQYFSNYGNVQNVSIVTDKNTGKKRGFGFVEFDD 626
+LF+G I E++ +F YG + + ++ GFGFVE +D
Sbjct: 5 RLFVGRIPPQATREDMMDFFKGYGQILDCKLM--------NGFGFVEVED 46
Score = 26.6 bits (56), Expect = 3.1
Identities = 16/60 (26%), Positives = 28/60 (46%)
Frame = +3
Query: 204 KIFIGGLNYKTTDESLKTHFVKWGEIVDVVVMKDPKTKRSRGFGFITYSKAHMVDDAQNN 383
++F+G + + T E + F +G+I+D +M GFGF+ A D N+
Sbjct: 5 RLFVGRIPPQATREDMMDFFKGYGQILDCKLM--------NGFGFVEVEDARDARDIVND 56
>SPAC3A12.11c |cwf2|prp3|RNA-binding protein
Cwf2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 388
Score = 31.1 bits (67), Expect = 0.15
Identities = 16/48 (33%), Positives = 26/48 (54%), Gaps = 1/48 (2%)
Frame = +3
Query: 207 IFIGGLN-YKTTDESLKTHFVKWGEIVDVVVMKDPKTKRSRGFGFITY 347
+++GG+ +E + HF +WG+I + V+ SRG FITY
Sbjct: 176 LYVGGITPTDDIEEIVSRHFAEWGDIERIRVL------NSRGIAFITY 217
>SPCC74.09 |mug24||RNA-binding protein, rrm type|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 654
Score = 30.7 bits (66), Expect = 0.19
Identities = 26/135 (19%), Positives = 57/135 (42%), Gaps = 4/135 (2%)
Frame = +3
Query: 198 HRKIFIGGLNYKTTDESLKTHFVKWGEIVDVVVMKDPKTKRSRGFGFITYSKAHMVDDAQ 377
+R +F+G L+ KT + ++ G + D + + K FITYS A+ D
Sbjct: 408 NRTVFLGNLHTKTKGHEI-CDLIRHGGLQDFHYIPE---KHICFVTFITYSAANAFHDYL 463
Query: 378 NNRPHKIDGRFVET----KRAVARQDIKNPEAGATVKKLFIGGIKDDHEEEELRQYFSNY 545
+ GR ++ + + +++ + ++ I D EEL Y
Sbjct: 464 AEEEVLLHGRRIKVGWGKESGPLPRVLEDSILMGASRNVYFSHISDSLTTEELELILRQY 523
Query: 546 GNVQNVSIVTDKNTG 590
G ++++ + ++++G
Sbjct: 524 GEIESIKYLKNRSSG 538
>SPAC343.07 |mug28||RNA-binding protein Mug28|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 609
Score = 30.3 bits (65), Expect = 0.25
Identities = 12/36 (33%), Positives = 22/36 (61%)
Frame = +3
Query: 243 ESLKTHFVKWGEIVDVVVMKDPKTKRSRGFGFITYS 350
+ L+ F K+G I + P T+ S+G+GF+++S
Sbjct: 435 QQLEELFSKFGRIKSCTLASYPSTEISKGYGFVSFS 470
>SPAC17A2.09c |csx1||RNA-binding protein Csx1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 632
Score = 29.9 bits (64), Expect = 0.34
Identities = 16/58 (27%), Positives = 30/58 (51%)
Frame = +3
Query: 207 IFIGGLNYKTTDESLKTHFVKWGEIVDVVVMKDPKTKRSRGFGFITYSKAHMVDDAQN 380
+F+GGL +++ L+ F +G I+++ K +G GF+ YS+ + A N
Sbjct: 299 VFVGGLASNLSEKDLQVCFQPFGRILNI------KIPFGKGCGFVQYSEKSAAEKAIN 350
>SPAC1610.03c |crp79|meu5|poly|Schizosaccharomyces pombe|chr
1|||Manual
Length = 710
Score = 29.1 bits (62), Expect = 0.59
Identities = 11/36 (30%), Positives = 21/36 (58%)
Frame = +3
Query: 513 EEELRQYFSNYGNVQNVSIVTDKNTGKKRGFGFVEF 620
+ +L FS +G++ + + N+G +G+GFV F
Sbjct: 397 KSQLEDLFSPFGSILSSMLACYPNSGISKGYGFVAF 432
Score = 27.9 bits (59), Expect = 1.4
Identities = 8/28 (28%), Positives = 19/28 (67%)
Frame = +3
Query: 207 IFIGGLNYKTTDESLKTHFVKWGEIVDV 290
I++G ++ + +DE + HF K+G++ +
Sbjct: 19 IYVGNIDSRLSDEEIIKHFSKYGQVESI 46
Score = 27.9 bits (59), Expect = 1.4
Identities = 9/28 (32%), Positives = 19/28 (67%)
Frame = +3
Query: 480 LFIGGIKDDHEEEELRQYFSNYGNVQNV 563
+++G I +EE+ ++FS YG V+++
Sbjct: 19 IYVGNIDSRLSDEEIIKHFSKYGQVESI 46
>SPCC550.02c |cwf5|ecm2|RNA-binding protein Cwf5|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 354
Score = 28.7 bits (61), Expect = 0.77
Identities = 10/37 (27%), Positives = 23/37 (62%)
Frame = +3
Query: 453 PEAGATVKKLFIGGIKDDHEEEELRQYFSNYGNVQNV 563
P + LF+ G++D+ + ++R++F YG +++V
Sbjct: 205 PPKDKKIASLFLIGVEDELADYKIRKHFEQYGPLKSV 241
>SPAC222.09 |seb1||RNA-binding protein Seb1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 620
Score = 28.3 bits (60), Expect = 1.0
Identities = 12/30 (40%), Positives = 18/30 (60%)
Frame = +3
Query: 474 KKLFIGGIKDDHEEEELRQYFSNYGNVQNV 563
+ LF+GGI E LR F +G+VQ++
Sbjct: 406 RTLFLGGITRSVREPVLRSMFERFGSVQSL 435
>SPBC11C11.08 |srp1||SR family protein Srp1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 275
Score = 28.3 bits (60), Expect = 1.0
Identities = 19/79 (24%), Positives = 35/79 (44%)
Frame = +3
Query: 201 RKIFIGGLNYKTTDESLKTHFVKWGEIVDVVVMKDPKTKRSRGFGFITYSKAHMVDDAQN 380
R +++ G L F +G ++ + P+T+ SR F F+ Y + +DA
Sbjct: 7 RTLYVTGFRDGMRARELAYEFEPFGPLIRCDI-PIPRTRTSRPFAFVEYEDSRDAEDAY- 64
Query: 381 NRPHKIDGRFVETKRAVAR 437
+++ GR +E V R
Sbjct: 65 ---YEVHGRRLERGGGVLR 80
>SPAC3C7.05c |mug191||alpha-1,6-mannanase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 442
Score = 26.2 bits (55), Expect = 4.1
Identities = 13/48 (27%), Positives = 23/48 (47%), Gaps = 1/48 (2%)
Frame = +3
Query: 162 QNGDDGYEEPEVHRKIFIGGLNYKTTDESLKTHFVKWGE-IVDVVVMK 302
+ DD Y + I + Y TT+ S + H+V E I+ +++ K
Sbjct: 96 EGNDDVYYDDNAQVAIGLATAGYYTTNSSRRDHYVSRAESIISLIINK 143
>SPBC56F2.08c |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 661
Score = 25.8 bits (54), Expect = 5.5
Identities = 19/61 (31%), Positives = 29/61 (47%), Gaps = 1/61 (1%)
Frame = +1
Query: 400 MADSLKPNVLLQGKIS-RILKLVQLLRSCSLGV*KMIMKRKN*DSIFRTMATYRTLASSQ 576
+ DS+ + + K++ IL V+ LRS K+ RKN DS F T +A S
Sbjct: 133 IVDSMIASAIENNKVATEILPPVETLRSRQFEASKLREIRKNIDSGFYTQEEIEVIARSM 192
Query: 577 I 579
+
Sbjct: 193 L 193
>SPCC1620.14c |snf22|SPCC830.01c|ATP-dependent DNA helicase
Snf22|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1680
Score = 25.4 bits (53), Expect = 7.2
Identities = 12/39 (30%), Positives = 19/39 (48%)
Frame = +3
Query: 477 KLFIGGIKDDHEEEELRQYFSNYGNVQNVSIVTDKNTGK 593
K+F+GG D++ + L S Y N N + + GK
Sbjct: 862 KIFVGGTLKDYQLKGLEWMLSLYNNNLNGILADEMGLGK 900
>SPCC594.01 ||SPCC736.16|DUF1769 family protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 791
Score = 25.4 bits (53), Expect = 7.2
Identities = 11/32 (34%), Positives = 18/32 (56%)
Frame = +3
Query: 444 IKNPEAGATVKKLFIGGIKDDHEEEELRQYFS 539
I + G V K I + DD E++L++YF+
Sbjct: 345 IMDENYGKDVYKHGISNVPDDENEDDLQRYFT 376
>SPBC23G7.06c |||conserved eukaryotic protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 745
Score = 25.0 bits (52), Expect = 9.5
Identities = 18/87 (20%), Positives = 37/87 (42%)
Frame = +3
Query: 192 EVHRKIFIGGLNYKTTDESLKTHFVKWGEIVDVVVMKDPKTKRSRGFGFITYSKAHMVDD 371
+ H+ IGG + +TT L K+G + + +S F+ K+ +DD
Sbjct: 542 KAHKPRSIGGDSSQTT---LSETTKKYGSVAKKSFFQGVSDAKS----FVKKIKSTYIDD 594
Query: 372 AQNNRPHKIDGRFVETKRAVARQDIKN 452
+ +N P I+ + +++ +N
Sbjct: 595 SSSNSPSDIESNYSADDNEISKSKAQN 621
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,726,817
Number of Sequences: 5004
Number of extensions: 57037
Number of successful extensions: 253
Number of sequences better than 10.0: 42
Number of HSP's better than 10.0 without gapping: 197
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 239
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 295793106
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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