Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP07_F_J21
(579 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC1259.15c |ubc11|ubcdp, ubcp4|ubiquitin conjugating enzyme E2... 28 0.86
SPBC337.07c |||carboxypeptidase |Schizosaccharomyces pombe|chr 2... 28 0.86
SPBC28F2.12 |rpb1||DNA-directed RNA polymerase II large subunit|... 28 1.1
SPCC132.01c ||SPCC1322.17c|DUF814 family protein|Schizosaccharom... 27 1.5
SPAC18B11.07c |rhp6|ubc2|Rad6 homolog, ubiquitin conjugating enz... 27 2.6
SPBC2G2.11 |||N-myristoyltransferase 1|Schizosaccharomyces pombe... 26 3.5
SPCC24B10.07 |gad8||serine/threonine protein kinase Gad8 |Schizo... 25 6.1
SPCC330.02 |rhp7|SPCC613.14|Rad7 homolog Rhp7|Schizosaccharomyce... 25 8.0
SPAC1039.02 |||phosphoprotein phosphatase |Schizosaccharomyces p... 25 8.0
SPCC962.02c |bir1|cut17, pbh1, SPCP31B10.10c|survivin homolog|Sc... 25 8.0
>SPCC1259.15c |ubc11|ubcdp, ubcp4|ubiquitin conjugating enzyme E2-C
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 176
Score = 28.3 bits (60), Expect = 0.86
Identities = 12/38 (31%), Positives = 18/38 (47%)
Frame = +1
Query: 250 CFDSLERTWIFLHNVRAAQKKLAKIFSCDNNVHPLNEE 363
C D L+ W ++NV+ L + NN PLN +
Sbjct: 113 CLDILKDKWSAVYNVQTILLSLQSLLGEPNNASPLNAQ 150
>SPBC337.07c |||carboxypeptidase |Schizosaccharomyces pombe|chr
2|||Manual
Length = 497
Score = 28.3 bits (60), Expect = 0.86
Identities = 14/28 (50%), Positives = 17/28 (60%)
Frame = +1
Query: 136 QLLAAEDVDGINFKILKKMQWINVDVSN 219
QLLA D DG K+L K +WI + V N
Sbjct: 264 QLLAKYDSDGHVRKLLDKFEWIFIPVLN 291
>SPBC28F2.12 |rpb1||DNA-directed RNA polymerase II large
subunit|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1752
Score = 27.9 bits (59), Expect = 1.1
Identities = 16/47 (34%), Positives = 22/47 (46%)
Frame = +1
Query: 352 LNEEVGRPVDCDWEVLTAANVKEESEVPTNNFENERAAEKKLAHILS 492
LNE+ RP DW ++T V S P+ + + E L H LS
Sbjct: 230 LNEQYARP---DWMIITVLPVPPPSVRPSISVDGTSRGEDDLTHKLS 273
>SPCC132.01c ||SPCC1322.17c|DUF814 family
protein|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1021
Score = 27.5 bits (58), Expect = 1.5
Identities = 12/23 (52%), Positives = 16/23 (69%), Gaps = 1/23 (4%)
Frame = +1
Query: 103 CRLCAEATSNNQLLAA-EDVDGI 168
C+LCA+ T N LLAA ++ D I
Sbjct: 255 CQLCADETKKNDLLAAFQEADSI 277
>SPAC18B11.07c |rhp6|ubc2|Rad6 homolog, ubiquitin conjugating enzyme
E2 Rhp6|Schizosaccharomyces pombe|chr 1|||Manual
Length = 151
Score = 26.6 bits (56), Expect = 2.6
Identities = 11/41 (26%), Positives = 18/41 (43%)
Frame = +1
Query: 250 CFDSLERTWIFLHNVRAAQKKLAKIFSCDNNVHPLNEEVGR 372
C D L+ W ++V A + + + NN P N E +
Sbjct: 88 CLDILQNRWSPTYDVAAILTSIQSLLNDPNNASPANAEAAQ 128
>SPBC2G2.11 |||N-myristoyltransferase 1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 466
Score = 26.2 bits (55), Expect = 3.5
Identities = 7/17 (41%), Positives = 14/17 (82%)
Frame = +1
Query: 172 FKILKKMQWINVDVSND 222
+++LK+ +W +DV+ND
Sbjct: 86 YRLLKEFEWATIDVTND 102
>SPCC24B10.07 |gad8||serine/threonine protein kinase Gad8
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 569
Score = 25.4 bits (53), Expect = 6.1
Identities = 14/58 (24%), Positives = 28/58 (48%)
Frame = +1
Query: 295 RAAQKKLAKIFSCDNNVHPLNEEVGRPVDCDWEVLTAANVKEESEVPTNNFENERAAE 468
RA +K+L + + HP +++ C ++ ES + T+NF++E +E
Sbjct: 465 RAPEKRLGSGGAQEIKNHPFFDDIDWKKLCAKKIQPPFKPSVESAIDTSNFDSEFTSE 522
>SPCC330.02 |rhp7|SPCC613.14|Rad7 homolog Rhp7|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 563
Score = 25.0 bits (52), Expect = 8.0
Identities = 11/17 (64%), Positives = 13/17 (76%)
Frame = -2
Query: 377 TGLPTSSLSGCTLLSQE 327
+GL T SLSGCT L+ E
Sbjct: 399 SGLHTLSLSGCTKLTDE 415
>SPAC1039.02 |||phosphoprotein phosphatase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 601
Score = 25.0 bits (52), Expect = 8.0
Identities = 16/51 (31%), Positives = 20/51 (39%)
Frame = -1
Query: 429 LGFFFNVGRGQNLPVAIDRSTNFLIKWMHIVIARKDLCQFLLSRSDVVQKY 277
+GF FN N V T +W I R D+ FLL V+ Y
Sbjct: 194 MGFLFNFSSNANNTVVTPVETAIKSEWYQQQINRTDVDLFLLIGHIPVRDY 244
>SPCC962.02c |bir1|cut17, pbh1, SPCP31B10.10c|survivin
homolog|Schizosaccharomyces pombe|chr 3|||Manual
Length = 997
Score = 25.0 bits (52), Expect = 8.0
Identities = 22/85 (25%), Positives = 34/85 (40%), Gaps = 10/85 (11%)
Frame = +1
Query: 244 FACFDSLERTWIFLHNVRAAQKKLAKIFSCDNNVH-------PLNEEVGRPVDC---DWE 393
+ C S+ F++N A K A CD N+H P E R DC W+
Sbjct: 137 YHCEPSVMAASGFVYNPTADAKDAAHCLYCDINLHDWEPDDDPYTEHKRRRADCVFFTWK 196
Query: 394 VLTAANVKEESEVPTNNFENERAAE 468
+ + + S + T+N + E E
Sbjct: 197 DPNSLSPTKLSFLSTSNIDPEDLTE 221
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,222,279
Number of Sequences: 5004
Number of extensions: 44990
Number of successful extensions: 138
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 131
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 138
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 248115846
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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