Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP07_F_J21
(579 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Y12543-1|CAA73142.1| 897|Caenorhabditis elegans VPS34 homologue... 31 0.78
U97190-7|AAF23185.1| 650|Caenorhabditis elegans Related to yeas... 31 0.78
U97190-6|AAV58893.1| 716|Caenorhabditis elegans Related to yeas... 31 0.78
U97190-5|AAV34807.1| 897|Caenorhabditis elegans Related to yeas... 31 0.78
U97190-4|AAV58894.1| 720|Caenorhabditis elegans Related to yeas... 31 0.78
U97190-3|AAF23184.1| 901|Caenorhabditis elegans Related to yeas... 31 0.78
Z81516-7|CAB04207.1| 1377|Caenorhabditis elegans Hypothetical pr... 29 3.2
Z81467-6|CAB03874.1| 1377|Caenorhabditis elegans Hypothetical pr... 29 3.2
Z81575-8|CAB04634.1| 433|Caenorhabditis elegans Hypothetical pr... 28 5.5
U97008-14|AAB52302.2| 298|Caenorhabditis elegans Serpentine rec... 28 5.5
Z93397-8|CAB07716.2| 545|Caenorhabditis elegans Hypothetical pr... 27 9.6
AL132904-27|CAC35854.1| 545|Caenorhabditis elegans Hypothetical... 27 9.6
>Y12543-1|CAA73142.1| 897|Caenorhabditis elegans VPS34 homologue
protein.
Length = 897
Score = 30.7 bits (66), Expect = 0.78
Identities = 16/49 (32%), Positives = 22/49 (44%)
Frame = +1
Query: 274 WIFLHNVRAAQKKLAKIFSCDNNVHPLNEEVGRPVDCDWEVLTAANVKE 420
W F H +R K L K N VHP + + DWE++ A + E
Sbjct: 333 WKFRHYLRQFPKALNKYLRSVNWVHPQEVKTALALMNDWELIEAEDALE 381
>U97190-7|AAF23185.1| 650|Caenorhabditis elegans Related to yeast
vacuolar proteinsorting factor protein 34, isoform b
protein.
Length = 650
Score = 30.7 bits (66), Expect = 0.78
Identities = 16/49 (32%), Positives = 22/49 (44%)
Frame = +1
Query: 274 WIFLHNVRAAQKKLAKIFSCDNNVHPLNEEVGRPVDCDWEVLTAANVKE 420
W F H +R K L K N VHP + + DWE++ A + E
Sbjct: 86 WKFRHYLRQFPKALNKYLRSVNWVHPQEVKTALALMNDWELIEAEDALE 134
>U97190-6|AAV58893.1| 716|Caenorhabditis elegans Related to yeast
vacuolar proteinsorting factor protein 34, isoform d
protein.
Length = 716
Score = 30.7 bits (66), Expect = 0.78
Identities = 16/49 (32%), Positives = 22/49 (44%)
Frame = +1
Query: 274 WIFLHNVRAAQKKLAKIFSCDNNVHPLNEEVGRPVDCDWEVLTAANVKE 420
W F H +R K L K N VHP + + DWE++ A + E
Sbjct: 333 WKFRHYLRQFPKALNKYLRSVNWVHPQEVKTALALMNDWELIEAEDALE 381
>U97190-5|AAV34807.1| 897|Caenorhabditis elegans Related to yeast
vacuolar proteinsorting factor protein 34, isoform c
protein.
Length = 897
Score = 30.7 bits (66), Expect = 0.78
Identities = 16/49 (32%), Positives = 22/49 (44%)
Frame = +1
Query: 274 WIFLHNVRAAQKKLAKIFSCDNNVHPLNEEVGRPVDCDWEVLTAANVKE 420
W F H +R K L K N VHP + + DWE++ A + E
Sbjct: 333 WKFRHYLRQFPKALNKYLRSVNWVHPQEVKTALALMNDWELIEAEDALE 381
>U97190-4|AAV58894.1| 720|Caenorhabditis elegans Related to yeast
vacuolar proteinsorting factor protein 34, isoform e
protein.
Length = 720
Score = 30.7 bits (66), Expect = 0.78
Identities = 16/49 (32%), Positives = 22/49 (44%)
Frame = +1
Query: 274 WIFLHNVRAAQKKLAKIFSCDNNVHPLNEEVGRPVDCDWEVLTAANVKE 420
W F H +R K L K N VHP + + DWE++ A + E
Sbjct: 337 WKFRHYLRQFPKALNKYLRSVNWVHPQEVKTALALMNDWELIEAEDALE 385
>U97190-3|AAF23184.1| 901|Caenorhabditis elegans Related to yeast
vacuolar proteinsorting factor protein 34, isoform a
protein.
Length = 901
Score = 30.7 bits (66), Expect = 0.78
Identities = 16/49 (32%), Positives = 22/49 (44%)
Frame = +1
Query: 274 WIFLHNVRAAQKKLAKIFSCDNNVHPLNEEVGRPVDCDWEVLTAANVKE 420
W F H +R K L K N VHP + + DWE++ A + E
Sbjct: 337 WKFRHYLRQFPKALNKYLRSVNWVHPQEVKTALALMNDWELIEAEDALE 385
>Z81516-7|CAB04207.1| 1377|Caenorhabditis elegans Hypothetical
protein F26H9.8 protein.
Length = 1377
Score = 28.7 bits (61), Expect = 3.2
Identities = 19/57 (33%), Positives = 35/57 (61%)
Frame = +1
Query: 55 FGVNIITVKMTEEKSYCRLCAEATSNNQLLAAEDVDGINFKILKKMQWINVDVSNDL 225
+GV + +K TE K+ +++S N+L E++ G+NFKILK ++++ N+L
Sbjct: 218 YGVEL-ALKNTEYKA-----VDSSSTNKLDEPENLHGLNFKILKNR---HLELQNEL 265
>Z81467-6|CAB03874.1| 1377|Caenorhabditis elegans Hypothetical
protein F26H9.8 protein.
Length = 1377
Score = 28.7 bits (61), Expect = 3.2
Identities = 19/57 (33%), Positives = 35/57 (61%)
Frame = +1
Query: 55 FGVNIITVKMTEEKSYCRLCAEATSNNQLLAAEDVDGINFKILKKMQWINVDVSNDL 225
+GV + +K TE K+ +++S N+L E++ G+NFKILK ++++ N+L
Sbjct: 218 YGVEL-ALKNTEYKA-----VDSSSTNKLDEPENLHGLNFKILKNR---HLELQNEL 265
>Z81575-8|CAB04634.1| 433|Caenorhabditis elegans Hypothetical
protein R08H2.9 protein.
Length = 433
Score = 27.9 bits (59), Expect = 5.5
Identities = 12/26 (46%), Positives = 17/26 (65%)
Frame = -2
Query: 218 LETSTFIHCIFFNILKFIPSTSSAAK 141
++ + FIH +FF LK +PS S AK
Sbjct: 1 MKPACFIHSVFFCKLKILPSFSEYAK 26
>U97008-14|AAB52302.2| 298|Caenorhabditis elegans Serpentine
receptor, class x protein56 protein.
Length = 298
Score = 27.9 bits (59), Expect = 5.5
Identities = 13/38 (34%), Positives = 19/38 (50%)
Frame = +1
Query: 169 NFKILKKMQWINVDVSNDLLPNAICFACFDSLERTWIF 282
N KILK + WI + L C+ +DS R ++F
Sbjct: 119 NTKILKFIVWIFISFVAILFYEKFCYIYYDSASRFFVF 156
>Z93397-8|CAB07716.2| 545|Caenorhabditis elegans Hypothetical
protein ZC482.2 protein.
Length = 545
Score = 27.1 bits (57), Expect = 9.6
Identities = 17/43 (39%), Positives = 22/43 (51%), Gaps = 5/43 (11%)
Frame = +1
Query: 325 FSCDNN-VHPLNEEVGR----PVDCDWEVLTAANVKEESEVPT 438
FSCD +H NE + R CD E + +NVKE S+ T
Sbjct: 185 FSCDGGFLHMYNELIVRGNLKDCGCDGEKVNVSNVKEYSKCKT 227
>AL132904-27|CAC35854.1| 545|Caenorhabditis elegans Hypothetical
protein ZC482.2 protein.
Length = 545
Score = 27.1 bits (57), Expect = 9.6
Identities = 17/43 (39%), Positives = 22/43 (51%), Gaps = 5/43 (11%)
Frame = +1
Query: 325 FSCDNN-VHPLNEEVGR----PVDCDWEVLTAANVKEESEVPT 438
FSCD +H NE + R CD E + +NVKE S+ T
Sbjct: 185 FSCDGGFLHMYNELIVRGNLKDCGCDGEKVNVSNVKEYSKCKT 227
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,273,740
Number of Sequences: 27780
Number of extensions: 250538
Number of successful extensions: 770
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 723
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 770
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1205362812
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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