Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP07_F_J21
         (579 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase...    23   2.9  
DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride c...    21   6.7  
AF213012-1|AAG43568.1|  492|Apis mellifera acetylcholinesterase ...    21   8.8  
AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase ...    21   8.8  

>AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase
           protein.
          Length = 1143

 Score = 22.6 bits (46), Expect = 2.9
 Identities = 8/25 (32%), Positives = 15/25 (60%)
 Frame = -1

Query: 480 C*FLFSGSFIFEIICGHLGFFFNVG 406
           C ++ + S +FE +C H+ +  N G
Sbjct: 140 CRYVTTTSGMFEALCNHIKYSTNKG 164


>DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 21.4 bits (43), Expect = 6.7
 Identities = 10/31 (32%), Positives = 15/31 (48%)
 Frame = -3

Query: 514 VYALCYRKKGYVLISFQRLFHFRNYLWAPRI 422
           +Y L       VL+ F   F+FR +   PR+
Sbjct: 42  MYVLSISSVSEVLMDFTLDFYFRQFWTDPRL 72


>AF213012-1|AAG43568.1|  492|Apis mellifera acetylcholinesterase
           protein.
          Length = 492

 Score = 21.0 bits (42), Expect = 8.8
 Identities = 10/42 (23%), Positives = 17/42 (40%)
 Frame = +1

Query: 259 SLERTWIFLHNVRAAQKKLAKIFSCDNNVHPLNEEVGRPVDC 384
           +L   W ++   +A +     +  C  N   LNE   R + C
Sbjct: 281 TLNAPWSYMSGEKANEVATILVDDCGCNSTMLNENPARVMAC 322


>AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase
           protein.
          Length = 628

 Score = 21.0 bits (42), Expect = 8.8
 Identities = 10/42 (23%), Positives = 17/42 (40%)
 Frame = +1

Query: 259 SLERTWIFLHNVRAAQKKLAKIFSCDNNVHPLNEEVGRPVDC 384
           +L   W ++   +A +     +  C  N   LNE   R + C
Sbjct: 281 TLNAPWSYMSGEKANEVATILVDDCGCNSTMLNENPARVMAC 322


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 148,133
Number of Sequences: 438
Number of extensions: 3564
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 16748661
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)