Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP07_F_J18
(329 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC23A1.11 |rpl1602|rpl16-2|60S ribosomal protein L13/L16|Schiz... 132 1e-32
SPBC839.13c |rpl1601||60S ribosomal protein L13/L16|Schizosaccha... 132 1e-32
SPBC2G2.05 |rpl1603|rpl16c|60S ribosomal protein L13/L16|Schizos... 129 9e-32
SPBP8B7.17c |||phosphomethylpyrimidine kinase|Schizosaccharomyce... 29 0.24
SPBC13E7.06 |msd1|mug172|spindle pole body protein Msd1|Schizosa... 26 1.3
SPAC3H5.06c |pol1|swi7, polA|DNA polymerase alpha catalytic subu... 26 1.7
SPAC1B9.02c |sck1||serine/threonine protein kinase Sck1|Schizosa... 25 2.2
SPAC1834.09 |mug51||conserved fungal protein|Schizosaccharomyces... 25 3.9
SPAC3G9.11c |||pyruvate decarboxylase |Schizosaccharomyces pombe... 24 6.8
>SPAC23A1.11 |rpl1602|rpl16-2|60S ribosomal protein
L13/L16|Schizosaccharomyces pombe|chr 1|||Manual
Length = 197
Score = 132 bits (319), Expect = 1e-32
Identities = 59/87 (67%), Positives = 72/87 (82%)
Frame = +1
Query: 43 KAIVIDGRGHLLGRLAAVIAKVLLEGNKVVVVRCEQINISGNFFRNKLKLMSFLRKRCNV 222
K +VID +GHLLGRLA+V+AK LL G KVVVVRCE++NISG+FFRNKLK +++LRK C
Sbjct: 6 KVVVIDAKGHLLGRLASVVAKQLLGGQKVVVVRCEELNISGHFFRNKLKYLAYLRKACRY 65
Query: 223 NPARGPFHFRAPSXILWKTVKGMIPPK 303
NP+RG FHFRAPS I K V+GM+P K
Sbjct: 66 NPSRGAFHFRAPSRIFQKAVRGMLPHK 92
>SPBC839.13c |rpl1601||60S ribosomal protein
L13/L16|Schizosaccharomyces pombe|chr 2|||Manual
Length = 197
Score = 132 bits (319), Expect = 1e-32
Identities = 59/87 (67%), Positives = 72/87 (82%)
Frame = +1
Query: 43 KAIVIDGRGHLLGRLAAVIAKVLLEGNKVVVVRCEQINISGNFFRNKLKLMSFLRKRCNV 222
K +VID +GHLLGRLA+V+AK LL G KVVVVRCE++NISG+FFRNKLK +++LRK C
Sbjct: 6 KVVVIDAKGHLLGRLASVVAKQLLGGQKVVVVRCEELNISGHFFRNKLKYLAYLRKACRY 65
Query: 223 NPARGPFHFRAPSXILWKTVKGMIPPK 303
NP+RG FHFRAPS I K V+GM+P K
Sbjct: 66 NPSRGAFHFRAPSRIFQKAVRGMLPHK 92
>SPBC2G2.05 |rpl1603|rpl16c|60S ribosomal protein
L13/L16|Schizosaccharomyces pombe|chr 2|||Manual
Length = 197
Score = 129 bits (312), Expect = 9e-32
Identities = 56/87 (64%), Positives = 71/87 (81%)
Frame = +1
Query: 43 KAIVIDGRGHLLGRLAAVIAKVLLEGNKVVVVRCEQINISGNFFRNKLKLMSFLRKRCNV 222
K ++ID +GHL+GRLA+ +AK LL G KVVVVRCE++NISG+FFRNKLK +++LRK C
Sbjct: 6 KLVIIDAKGHLMGRLASTVAKQLLAGQKVVVVRCEELNISGHFFRNKLKYLAYLRKACRY 65
Query: 223 NPARGPFHFRAPSXILWKTVKGMIPPK 303
NP+RG FHFRAPS I K V+GM+P K
Sbjct: 66 NPSRGAFHFRAPSRIFTKAVRGMLPHK 92
>SPBP8B7.17c |||phosphomethylpyrimidine kinase|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 506
Score = 28.7 bits (61), Expect = 0.24
Identities = 14/35 (40%), Positives = 21/35 (60%)
Frame = +1
Query: 70 HLLGRLAAVIAKVLLEGNKVVVVRCEQINISGNFF 174
H L + AV K++ G K VV+RC+ I + +FF
Sbjct: 157 HHLEDVKAVGKKLIKAGCKNVVIRCDDIPFASDFF 191
>SPBC13E7.06 |msd1|mug172|spindle pole body protein
Msd1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 331
Score = 26.2 bits (55), Expect = 1.3
Identities = 17/46 (36%), Positives = 21/46 (45%)
Frame = -3
Query: 153 DLFAANHNNFVPFEKDLGDDCRQTAQQMTTAIDHYGLIAKARHFHN 16
D+ A N + L RQ QQM T +YGL+ KAR N
Sbjct: 126 DVNAKNELTLKALKNQLSVSLRQHEQQMETLKGNYGLV-KARKGRN 170
>SPAC3H5.06c |pol1|swi7, polA|DNA polymerase alpha catalytic subunit
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1405
Score = 25.8 bits (54), Expect = 1.7
Identities = 13/43 (30%), Positives = 19/43 (44%)
Frame = +1
Query: 178 NKLKLMSFLRKRCNVNPARGPFHFRAPSXILWKTVKGMIPPKQ 306
N+ + MS KRC RG HF L+ +K ++ Q
Sbjct: 1323 NRTRQMSVYGKRCCNKSCRGSVHFEYNDEQLYNQIKFLLKAVQ 1365
>SPAC1B9.02c |sck1||serine/threonine protein kinase
Sck1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 696
Score = 25.4 bits (53), Expect = 2.2
Identities = 15/55 (27%), Positives = 27/55 (49%)
Frame = -1
Query: 254 ALKWKGPRAGFTLHLLRRNDISLSLFLKKLPEILICSQRTTTTLFPSRRTLAMTA 90
AL+ G ++L+R+ND + +KK+ + LI ++ T R L T+
Sbjct: 304 ALRLIGKGTFGQVYLVRKNDTNRIYAMKKISKKLIVRKKEVTHTLGERNILVRTS 358
>SPAC1834.09 |mug51||conserved fungal protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 306
Score = 24.6 bits (51), Expect = 3.9
Identities = 11/25 (44%), Positives = 14/25 (56%)
Frame = -1
Query: 236 PRAGFTLHLLRRNDISLSLFLKKLP 162
P G H+LR + LS +LKK P
Sbjct: 219 PNLGIFTHILRNSRNDLSNYLKKRP 243
>SPAC3G9.11c |||pyruvate decarboxylase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 570
Score = 23.8 bits (49), Expect = 6.8
Identities = 13/34 (38%), Positives = 17/34 (50%)
Frame = -3
Query: 102 GDDCRQTAQQMTTAIDHYGLIAKARHFHNETGKA 1
G + ++T AID + AKAR H E KA
Sbjct: 327 GISMKHLLPKLTAAIDKKSVQAKARPVHFEPPKA 360
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,380,595
Number of Sequences: 5004
Number of extensions: 24885
Number of successful extensions: 60
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 58
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 60
length of database: 2,362,478
effective HSP length: 64
effective length of database: 2,042,222
effective search space used: 91899990
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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