Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP07_F_J18
(329 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_01_0071 - 522920-523063,524125-524212,524289-524677 121 2e-28
03_06_0010 + 30990002-30990273,30990372-30990488,30990581-309906... 119 6e-28
03_06_0007 - 30975910-30975921,30976660-30976747,30976850-309769... 49 1e-06
02_05_0024 + 25152090-25153151,25153232-25154145,25154499-251547... 29 0.89
02_05_0220 - 26885502-26885561,26885940-26886739,26887055-268874... 28 2.0
01_06_0707 + 31355929-31356244,31356766-31356992,31357081-313572... 28 2.0
04_03_0148 + 11869929-11869968,11870000-11870421 27 2.7
07_01_1106 - 10187609-10190041,10190292-10191932 27 3.6
03_05_0149 - 21278418-21278747,21279170-21279238,21279709-212797... 27 4.7
01_01_1052 + 8297105-8297422,8298978-8299310,8299820-8301010 26 6.2
>07_01_0071 - 522920-523063,524125-524212,524289-524677
Length = 206
Score = 121 bits (291), Expect = 2e-28
Identities = 53/96 (55%), Positives = 70/96 (72%)
Frame = +1
Query: 16 VVKMTGFSNKAIVIDGRGHLLGRLAAVIAKVLLEGNKVVVVRCEQINISGNFFRNKLKLM 195
+V +G + +V+D R H+LGRLA+++AK LL G +VVVVRCE++ ISG R K+K +
Sbjct: 1 MVSGSGLCTRRVVVDARHHMLGRLASLVAKELLNGQRVVVVRCEEMCISGGLVRQKMKYL 60
Query: 196 SFLRKRCNVNPARGPFHFRAPSXILWKTVKGMIPPK 303
FLRKR N P+ GP HFRAPS I W+TV+GMIP K
Sbjct: 61 RFLRKRMNTKPSHGPIHFRAPSRIFWRTVRGMIPHK 96
>03_06_0010 +
30990002-30990273,30990372-30990488,30990581-30990668,
30991505-30991648
Length = 206
Score = 119 bits (286), Expect = 6e-28
Identities = 53/96 (55%), Positives = 70/96 (72%)
Frame = +1
Query: 16 VVKMTGFSNKAIVIDGRGHLLGRLAAVIAKVLLEGNKVVVVRCEQINISGNFFRNKLKLM 195
+V +G +V+D R H+LGRLA++IAK LL G +VVVVRCE+I +SG R K+K +
Sbjct: 1 MVSGSGVCAPRVVVDARHHMLGRLASIIAKELLNGQRVVVVRCEEICMSGGLVRQKMKYL 60
Query: 196 SFLRKRCNVNPARGPFHFRAPSXILWKTVKGMIPPK 303
FLRKR N P+ GP HFR+P+ ILW+TV+GMIP K
Sbjct: 61 RFLRKRMNTKPSHGPIHFRSPAKILWRTVRGMIPHK 96
>03_06_0007 -
30975910-30975921,30976660-30976747,30976850-30976966,
30977081-30977154
Length = 96
Score = 48.8 bits (111), Expect = 1e-06
Identities = 18/29 (62%), Positives = 23/29 (79%)
Frame = +1
Query: 217 NVNPARGPFHFRAPSXILWKTVKGMIPPK 303
N P+ GP HFR+P+ ILW+TV+GMIP K
Sbjct: 2 NTKPSHGPIHFRSPAKILWRTVRGMIPHK 30
>02_05_0024 +
25152090-25153151,25153232-25154145,25154499-25154709,
25154757-25154921
Length = 783
Score = 29.1 bits (62), Expect = 0.89
Identities = 19/63 (30%), Positives = 27/63 (42%)
Frame = +2
Query: 92 QSSPRSFSKGTKLLWFAANKSISLATSLGTNSSLCHSCVRGAT*ILLVDLSILELHLXFY 271
Q+SP + +L WF N ++S LG C + T +DLS L Y
Sbjct: 567 QNSPTDNTSSERLQWFRENSTVS---ELGLEPGQCKVFIESDTVGRNLDLSSLASFEQLY 623
Query: 272 GKL 280
G+L
Sbjct: 624 GRL 626
>02_05_0220 - 26885502-26885561,26885940-26886739,26887055-26887421,
26887942-26888055,26888132-26888228,26889115-26889235,
26889306-26889390,26889494-26889643,26889871-26889987,
26890123-26890221,26890439-26890495,26890581-26890664,
26890759-26890828,26891015-26891169,26891557-26892095,
26892327-26892393,26892436-26892984,26893574-26893768,
26894485-26894569,26895822-26896441,26897154-26897486,
26897552-26897616,26897868-26897955,26898250-26898331,
26898720-26898796,26899152-26899256,26899496-26899630,
26900199-26900888,26901474-26902261,26902990-26904673
Length = 2825
Score = 27.9 bits (59), Expect = 2.0
Identities = 14/37 (37%), Positives = 21/37 (56%)
Frame = +1
Query: 88 AAVIAKVLLEGNKVVVVRCEQINISGNFFRNKLKLMS 198
A A ++ + VVVV CE+ I+G N +KL+S
Sbjct: 2515 AIAFAASAIQNSSVVVVTCEREVITGGHADNSVKLIS 2551
>01_06_0707 +
31355929-31356244,31356766-31356992,31357081-31357257,
31357355-31357510,31357778-31358054,31358192-31358306,
31360349-31360634,31361196-31361381,31361663-31361833,
31362307-31362426
Length = 676
Score = 27.9 bits (59), Expect = 2.0
Identities = 27/94 (28%), Positives = 38/94 (40%), Gaps = 12/94 (12%)
Frame = +1
Query: 52 VIDGRGHLLGRLAAVIAKVLLEGNK------------VVVVRCEQINISGNFFRNKLKLM 195
V+D +LGRLA+ IA + N+ VVVV E++ +SG KL
Sbjct: 541 VVDATDKILGRLASTIAVHIRGKNEATYTPSVDMGAFVVVVNAEKVAVSGKKRSQKLYRR 600
Query: 196 SFLRKRCNVNPARGPFHFRAPSXILWKTVKGMIP 297
R R P I+ V+GM+P
Sbjct: 601 HSGRPGGMKEETFDQLQKRIPERIIEHAVRGMLP 634
>04_03_0148 + 11869929-11869968,11870000-11870421
Length = 153
Score = 27.5 bits (58), Expect = 2.7
Identities = 8/19 (42%), Positives = 14/19 (73%)
Frame = +2
Query: 56 SMAVVICWAVWRQSSPRSF 112
S+ ++ICW VW++ + R F
Sbjct: 99 SLVLLICWMVWKERNARVF 117
>07_01_1106 - 10187609-10190041,10190292-10191932
Length = 1357
Score = 27.1 bits (57), Expect = 3.6
Identities = 11/30 (36%), Positives = 18/30 (60%)
Frame = -1
Query: 236 PRAGFTLHLLRRNDISLSLFLKKLPEILIC 147
P G +LH+L ++S L+ LP+ L+C
Sbjct: 375 PSLGSSLHMLSALNLSCCYSLRALPDSLVC 404
>03_05_0149 -
21278418-21278747,21279170-21279238,21279709-21279797,
21280395-21280467,21280846-21280917
Length = 210
Score = 26.6 bits (56), Expect = 4.7
Identities = 12/30 (40%), Positives = 16/30 (53%)
Frame = -1
Query: 269 RXLDGALKWKGPRAGFTLHLLRRNDISLSL 180
R DG +WK RA + L+ NDI L +
Sbjct: 170 RGPDGGWEWKARRAAAAIILVPANDIDLDM 199
>01_01_1052 + 8297105-8297422,8298978-8299310,8299820-8301010
Length = 613
Score = 26.2 bits (55), Expect = 6.2
Identities = 13/29 (44%), Positives = 17/29 (58%)
Frame = +1
Query: 64 RGHLLGRLAAVIAKVLLEGNKVVVVRCEQ 150
+GHLL R + + LEG KV + CEQ
Sbjct: 86 KGHLLDRHGLYMCDLCLEGRKVFI--CEQ 112
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,624,156
Number of Sequences: 37544
Number of extensions: 181601
Number of successful extensions: 489
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 483
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 488
length of database: 14,793,348
effective HSP length: 72
effective length of database: 12,090,180
effective search space used: 447336660
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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