Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP07_F_J18
(329 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z46381-2|CAA86515.1| 202|Caenorhabditis elegans Hypothetical pr... 144 1e-35
U31528-1|AAA74904.1| 202|Caenorhabditis elegans 60S ribosomal p... 144 1e-35
AC006638-8|AAK85487.2| 644|Caenorhabditis elegans Hypothetical ... 27 2.4
Z73973-2|CAA98264.1| 277|Caenorhabditis elegans Hypothetical pr... 27 3.2
Z81575-1|CAB04628.1| 277|Caenorhabditis elegans Hypothetical pr... 27 4.2
AF100307-8|AAC68937.2| 250|Caenorhabditis elegans Hypothetical ... 27 4.2
U39678-5|ABP49528.1| 213|Caenorhabditis elegans Hypothetical pr... 26 5.5
U39678-4|AAK39211.2| 330|Caenorhabditis elegans Hypothetical pr... 26 5.5
AF016425-4|AAB65339.1| 518|Caenorhabditis elegans Hypothetical ... 26 5.5
AC006677-5|AAF39950.1| 280|Caenorhabditis elegans Hypothetical ... 26 5.5
U70846-2|ABI18146.1| 647|Caenorhabditis elegans Hypothetical pr... 26 7.3
U70846-1|AAB09104.4| 510|Caenorhabditis elegans Hypothetical pr... 26 7.3
Z81038-5|CAB02766.3| 970|Caenorhabditis elegans Hypothetical pr... 25 9.7
Z68006-8|CAA91999.1| 1328|Caenorhabditis elegans Hypothetical pr... 25 9.7
Z68005-6|CAA91994.1| 1328|Caenorhabditis elegans Hypothetical pr... 25 9.7
U46753-6|AAO21474.1| 740|Caenorhabditis elegans Hypothetical pr... 25 9.7
U46753-5|ABB88235.1| 803|Caenorhabditis elegans Hypothetical pr... 25 9.7
U46753-4|AAO21475.1| 764|Caenorhabditis elegans Hypothetical pr... 25 9.7
AB096631-1|BAC76731.1| 972|Caenorhabditis elegans isoleucyl-tRN... 25 9.7
>Z46381-2|CAA86515.1| 202|Caenorhabditis elegans Hypothetical
protein M01F1.2 protein.
Length = 202
Score = 144 bits (350), Expect = 1e-35
Identities = 63/91 (69%), Positives = 79/91 (86%)
Frame = +1
Query: 31 GFSNKAIVIDGRGHLLGRLAAVIAKVLLEGNKVVVVRCEQINISGNFFRNKLKLMSFLRK 210
G SN+AI+IDG+ HLLGRLA+++AK LL+G+KVVV+R E+I ISGNF R+KLK MSFLRK
Sbjct: 2 GLSNRAIIIDGKNHLLGRLASIVAKKLLQGDKVVVLRAEEIVISGNFHRSKLKYMSFLRK 61
Query: 211 RCNVNPARGPFHFRAPSXILWKTVKGMIPPK 303
RCN+NPARG FH+RAP I W+TV+GM+P K
Sbjct: 62 RCNINPARGAFHYRAPGKIFWRTVRGMLPHK 92
>U31528-1|AAA74904.1| 202|Caenorhabditis elegans 60S ribosomal
protein L13A protein.
Length = 202
Score = 144 bits (350), Expect = 1e-35
Identities = 63/91 (69%), Positives = 79/91 (86%)
Frame = +1
Query: 31 GFSNKAIVIDGRGHLLGRLAAVIAKVLLEGNKVVVVRCEQINISGNFFRNKLKLMSFLRK 210
G SN+AI+IDG+ HLLGRLA+++AK LL+G+KVVV+R E+I ISGNF R+KLK MSFLRK
Sbjct: 2 GLSNRAIIIDGKNHLLGRLASIVAKKLLQGDKVVVLRAEEIVISGNFHRSKLKYMSFLRK 61
Query: 211 RCNVNPARGPFHFRAPSXILWKTVKGMIPPK 303
RCN+NPARG FH+RAP I W+TV+GM+P K
Sbjct: 62 RCNINPARGAFHYRAPGKIFWRTVRGMLPHK 92
>AC006638-8|AAK85487.2| 644|Caenorhabditis elegans Hypothetical
protein F41G4.7 protein.
Length = 644
Score = 27.5 bits (58), Expect = 2.4
Identities = 26/93 (27%), Positives = 38/93 (40%), Gaps = 1/93 (1%)
Frame = +1
Query: 40 NKAIVIDGRGHLLGRLAAVIAKVLLEGNKVVVVRCEQINISGNFFRNKLKLMSFLRKRCN 219
+K++ G G + AAV+A V+ V QIN GN K + + ++ N
Sbjct: 163 DKSVSSAGSGSIT--TAAVLANVVAPLEATVARIRAQINTIGNRVDELFKQQAHISRQLN 220
Query: 220 VNPARGPFHFRAPSXILWKTVK-GMIPPKQXVA 315
+ GP F+ LW K PKQ A
Sbjct: 221 LILESGPRPFKRIIINLWAQFKESDSQPKQITA 253
>Z73973-2|CAA98264.1| 277|Caenorhabditis elegans Hypothetical
protein F25D1.5 protein.
Length = 277
Score = 27.1 bits (57), Expect = 3.2
Identities = 12/25 (48%), Positives = 17/25 (68%)
Frame = +1
Query: 25 MTGFSNKAIVIDGRGHLLGRLAAVI 99
M FS K+++I G + +GR AAVI
Sbjct: 1 MARFSGKSVIITGSSNGIGRSAAVI 25
>Z81575-1|CAB04628.1| 277|Caenorhabditis elegans Hypothetical
protein R08H2.1 protein.
Length = 277
Score = 26.6 bits (56), Expect = 4.2
Identities = 13/25 (52%), Positives = 16/25 (64%)
Frame = +1
Query: 25 MTGFSNKAIVIDGRGHLLGRLAAVI 99
M FS K+I+I G +GR AAVI
Sbjct: 1 MARFSGKSIIITGSSSGIGRSAAVI 25
>AF100307-8|AAC68937.2| 250|Caenorhabditis elegans Hypothetical
protein T12B5.13 protein.
Length = 250
Score = 26.6 bits (56), Expect = 4.2
Identities = 14/35 (40%), Positives = 22/35 (62%), Gaps = 1/35 (2%)
Frame = +1
Query: 148 QINISGNFFRNKLKLM-SFLRKRCNVNPARGPFHF 249
Q + S NFF+NK K++ +FL+K+ + FHF
Sbjct: 93 QCDKSNNFFKNKNKIIYAFLQKKSFQKHRQLMFHF 127
>U39678-5|ABP49528.1| 213|Caenorhabditis elegans Hypothetical
protein C39D10.3b protein.
Length = 213
Score = 26.2 bits (55), Expect = 5.5
Identities = 12/24 (50%), Positives = 15/24 (62%)
Frame = -3
Query: 168 VARDIDLFAANHNNFVPFEKDLGD 97
V+ DLF A H +F+ KDLGD
Sbjct: 64 VSGAFDLFHAGHLSFLEAAKDLGD 87
>U39678-4|AAK39211.2| 330|Caenorhabditis elegans Hypothetical
protein C39D10.3a protein.
Length = 330
Score = 26.2 bits (55), Expect = 5.5
Identities = 12/24 (50%), Positives = 15/24 (62%)
Frame = -3
Query: 168 VARDIDLFAANHNNFVPFEKDLGD 97
V+ DLF A H +F+ KDLGD
Sbjct: 181 VSGAFDLFHAGHLSFLEAAKDLGD 204
>AF016425-4|AAB65339.1| 518|Caenorhabditis elegans Hypothetical
protein F59A7.8 protein.
Length = 518
Score = 26.2 bits (55), Expect = 5.5
Identities = 7/13 (53%), Positives = 10/13 (76%)
Frame = +2
Query: 71 ICWAVWRQSSPRS 109
+CW +WR+S P S
Sbjct: 152 LCWLLWRESQPHS 164
>AC006677-5|AAF39950.1| 280|Caenorhabditis elegans Hypothetical
protein R05D8.7 protein.
Length = 280
Score = 26.2 bits (55), Expect = 5.5
Identities = 10/25 (40%), Positives = 16/25 (64%)
Frame = +1
Query: 25 MTGFSNKAIVIDGRGHLLGRLAAVI 99
M FSNK ++I G + +GR A++
Sbjct: 1 MPRFSNKTVIITGSSNGIGRTTAIL 25
>U70846-2|ABI18146.1| 647|Caenorhabditis elegans Hypothetical
protein D1073.1b protein.
Length = 647
Score = 25.8 bits (54), Expect = 7.3
Identities = 12/28 (42%), Positives = 19/28 (67%)
Frame = +1
Query: 130 VVVRCEQINISGNFFRNKLKLMSFLRKR 213
++V C I +S F ++LKL SFLR++
Sbjct: 194 LIVICLLIVVSALAFYHRLKLQSFLREK 221
>U70846-1|AAB09104.4| 510|Caenorhabditis elegans Hypothetical
protein D1073.1a protein.
Length = 510
Score = 25.8 bits (54), Expect = 7.3
Identities = 12/28 (42%), Positives = 19/28 (67%)
Frame = +1
Query: 130 VVVRCEQINISGNFFRNKLKLMSFLRKR 213
++V C I +S F ++LKL SFLR++
Sbjct: 194 LIVICLLIVVSALAFYHRLKLQSFLREK 221
>Z81038-5|CAB02766.3| 970|Caenorhabditis elegans Hypothetical
protein C25A1.7 protein.
Length = 970
Score = 25.4 bits (53), Expect = 9.7
Identities = 9/43 (20%), Positives = 22/43 (51%)
Frame = +2
Query: 83 VWRQSSPRSFSKGTKLLWFAANKSISLATSLGTNSSLCHSCVR 211
+W S P S+ L+W ++ L ++ +S++ +S ++
Sbjct: 263 IWAHSEPSKISQFFALIWTTTPWTLPLNNAISVSSAIQYSLIQ 305
>Z68006-8|CAA91999.1| 1328|Caenorhabditis elegans Hypothetical
protein K09C8.5 protein.
Length = 1328
Score = 25.4 bits (53), Expect = 9.7
Identities = 9/23 (39%), Positives = 15/23 (65%)
Frame = -3
Query: 153 DLFAANHNNFVPFEKDLGDDCRQ 85
D+ + + ++PFEKD DCR+
Sbjct: 871 DIVSGANKPYMPFEKDSDMDCRR 893
>Z68005-6|CAA91994.1| 1328|Caenorhabditis elegans Hypothetical
protein K09C8.5 protein.
Length = 1328
Score = 25.4 bits (53), Expect = 9.7
Identities = 9/23 (39%), Positives = 15/23 (65%)
Frame = -3
Query: 153 DLFAANHNNFVPFEKDLGDDCRQ 85
D+ + + ++PFEKD DCR+
Sbjct: 871 DIVSGANKPYMPFEKDSDMDCRR 893
>U46753-6|AAO21474.1| 740|Caenorhabditis elegans Hypothetical
protein C34F11.3a protein.
Length = 740
Score = 25.4 bits (53), Expect = 9.7
Identities = 10/34 (29%), Positives = 17/34 (50%)
Frame = -3
Query: 231 SRIHVAPLTQE*HKLEFVPKEVARDIDLFAANHN 130
+ IH A + H L F+ K++ + D N+N
Sbjct: 294 THIHAASSMNQKHLLRFIKKKIKTEADTVVLNNN 327
>U46753-5|ABB88235.1| 803|Caenorhabditis elegans Hypothetical
protein C34F11.3c protein.
Length = 803
Score = 25.4 bits (53), Expect = 9.7
Identities = 10/34 (29%), Positives = 17/34 (50%)
Frame = -3
Query: 231 SRIHVAPLTQE*HKLEFVPKEVARDIDLFAANHN 130
+ IH A + H L F+ K++ + D N+N
Sbjct: 357 THIHAASSMNQKHLLRFIKKKIKTEADTVVLNNN 390
>U46753-4|AAO21475.1| 764|Caenorhabditis elegans Hypothetical
protein C34F11.3b protein.
Length = 764
Score = 25.4 bits (53), Expect = 9.7
Identities = 10/34 (29%), Positives = 17/34 (50%)
Frame = -3
Query: 231 SRIHVAPLTQE*HKLEFVPKEVARDIDLFAANHN 130
+ IH A + H L F+ K++ + D N+N
Sbjct: 318 THIHAASSMNQKHLLRFIKKKIKTEADTVVLNNN 351
>AB096631-1|BAC76731.1| 972|Caenorhabditis elegans isoleucyl-tRNA
synthetase (mitochondrial)protein.
Length = 972
Score = 25.4 bits (53), Expect = 9.7
Identities = 9/43 (20%), Positives = 22/43 (51%)
Frame = +2
Query: 83 VWRQSSPRSFSKGTKLLWFAANKSISLATSLGTNSSLCHSCVR 211
+W S P S+ L+W ++ L ++ +S++ +S ++
Sbjct: 263 IWAHSEPSKISQFFALIWTTTPWTLPLNNAISVSSAIQYSLIQ 305
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,851,745
Number of Sequences: 27780
Number of extensions: 146126
Number of successful extensions: 333
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 323
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 333
length of database: 12,740,198
effective HSP length: 72
effective length of database: 10,740,038
effective search space used: 397381406
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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