Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP07_F_J17
         (656 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_01_0435 + 3428552-3428636,3429242-3429352,3429434-3429738,342...   199   2e-51
11_01_0427 + 3274817-3274901,3275587-3275697,3275979-3276283,327...   197   6e-51
01_06_0083 + 26283492-26283756,26284255-26284467,26284620-262847...    31   0.81 
01_05_0125 - 18382402-18382761,18382863-18383036                       28   5.7  
04_04_1477 + 33873976-33874080,33874433-33874544,33874777-338748...    28   7.5  

>12_01_0435 +
           3428552-3428636,3429242-3429352,3429434-3429738,
           3429821-3430230,3430323-3430556,3430934-3431378,
           3432300-3432390,3433292-3433518,3433786-3433861,
           3434009-3434134,3434221-3434384
          Length = 757

 Score =  199 bits (485), Expect = 2e-51
 Identities = 91/161 (56%), Positives = 120/161 (74%), Gaps = 1/161 (0%)
 Frame = +2

Query: 176 YKAGMTHVVREPDRPGSKINKKEIVEAVTIIETPPMVCVGVVGYIETPHGLRALLTVWAE 355
           YKAGMTH+VRE ++PGSK++KKE  EAVTIIETPP+V VG+V Y++TP GLR+L +VWA+
Sbjct: 49  YKAGMTHIVREVEKPGSKLHKKETCEAVTIIETPPLVIVGLVAYVKTPRGLRSLNSVWAQ 108

Query: 356 HMSEDCRRRFYKNWYXXXXXXXXXXXXXWQDELGRKSIEKDFKKMIRYCSVVRVIAHTQM 535
           H+SE+ RRRFYKNW              +  + G+K I+   +KM +Y S+VRVIAHTQ+
Sbjct: 109 HLSEEVRRRFYKNWCKSKKKAFTKYALKYDSDAGKKEIQMQLEKMKKYASIVRVIAHTQI 168

Query: 536 KLLK-QRQKKAHIMEIQLNGGTIEDKVKWAREHLEKPIPVD 655
           + +K  +QKKAH+MEIQ+NGGTI DKV +  +  EK IPVD
Sbjct: 169 RKMKGLKQKKAHLMEIQINGGTIADKVDYGYKFFEKEIPVD 209



 Score = 78.2 bits (184), Expect = 5e-15
 Identities = 31/42 (73%), Positives = 37/42 (88%)
 Frame = +1

Query: 46  FQHPXHGSMGFYPKKRSRRHRGKVKAFPKDDPSKPVHLTAFI 171
           F+HP HGS+GF P+KRS RHRGKVK+FPKDD SKP HLT+F+
Sbjct: 6   FEHPRHGSLGFLPRKRSSRHRGKVKSFPKDDVSKPCHLTSFV 47


>11_01_0427 +
           3274817-3274901,3275587-3275697,3275979-3276283,
           3276406-3276815,3276942-3277200
          Length = 389

 Score =  197 bits (481), Expect = 6e-51
 Identities = 91/161 (56%), Positives = 119/161 (73%), Gaps = 1/161 (0%)
 Frame = +2

Query: 176 YKAGMTHVVREPDRPGSKINKKEIVEAVTIIETPPMVCVGVVGYIETPHGLRALLTVWAE 355
           YKAGMTH+VRE ++PGSK++KKE  EAVTIIETPP+V VG+V Y++TP GLR+L +VWA+
Sbjct: 49  YKAGMTHIVREVEKPGSKLHKKETCEAVTIIETPPIVVVGLVAYVKTPRGLRSLNSVWAQ 108

Query: 356 HMSEDCRRRFYKNWYXXXXXXXXXXXXXWQDELGRKSIEKDFKKMIRYCSVVRVIAHTQM 535
           H+SE+ RRRFYKNW              +  + G+K I+   +KM +Y SVVRVI HTQ+
Sbjct: 109 HLSEEVRRRFYKNWCKSKKKAFTKYALKYDSDAGKKEIQMQLEKMKKYASVVRVIVHTQI 168

Query: 536 KLLK-QRQKKAHIMEIQLNGGTIEDKVKWAREHLEKPIPVD 655
           + +K  +QKKAH+MEIQ+NGGTI DKV +  +  EK IPVD
Sbjct: 169 RKMKGLKQKKAHLMEIQINGGTIADKVDYGYKFFEKEIPVD 209



 Score = 77.0 bits (181), Expect = 1e-14
 Identities = 30/42 (71%), Positives = 37/42 (88%)
 Frame = +1

Query: 46  FQHPXHGSMGFYPKKRSRRHRGKVKAFPKDDPSKPVHLTAFI 171
           F+HP HGS+GF P+KRS RHRGKVK+FPKDD +KP HLT+F+
Sbjct: 6   FEHPRHGSLGFLPRKRSSRHRGKVKSFPKDDVNKPCHLTSFV 47


>01_06_0083 +
           26283492-26283756,26284255-26284467,26284620-26284771,
           26284884-26285157,26285277-26285485
          Length = 370

 Score = 31.1 bits (67), Expect = 0.81
 Identities = 15/39 (38%), Positives = 22/39 (56%)
 Frame = +1

Query: 466 NRKRFQEDDPLL*CCKSHCPHSNEAVKTATKEGSHYGNP 582
           N +RF  +DPLL CC  H P+   A  T  +  + +G+P
Sbjct: 297 NPRRFGINDPLLACCGGHGPYHTGA--TCDRTATVWGDP 333


>01_05_0125 - 18382402-18382761,18382863-18383036
          Length = 177

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 12/35 (34%), Positives = 20/35 (57%)
 Frame = -1

Query: 380 DVDSLQTYAPPRQSTERVVHEGSQCIQQHRHKPSE 276
           ++ +L    PPR ST R+V E   C+ + R + +E
Sbjct: 47  ELGALLPNLPPRASTTRIVEEAIACVGELRARTAE 81


>04_04_1477 +
           33873976-33874080,33874433-33874544,33874777-33874874,
           33875548-33876261,33876348-33876518,33876955-33877011,
           33877096-33878718
          Length = 959

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 9/30 (30%), Positives = 20/30 (66%)
 Frame = +2

Query: 566 HIMEIQLNGGTIEDKVKWAREHLEKPIPVD 655
           H++E + N  ++++K+K   +H E  +P+D
Sbjct: 460 HLLEDRENNESVDEKIKGDAQHEENTLPLD 489


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,862,164
Number of Sequences: 37544
Number of extensions: 391491
Number of successful extensions: 902
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 870
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 900
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1644004708
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)