Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP07_F_J17
(656 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z69337-1|CAA93269.1| 401|Caenorhabditis elegans ribosomal prote... 241 3e-64
Z69336-1|CAA93268.1| 401|Caenorhabditis elegans ribosomal prote... 241 3e-64
Z66495-12|CAA91277.1| 401|Caenorhabditis elegans Hypothetical p... 241 3e-64
Z49936-6|CAA90183.1| 401|Caenorhabditis elegans Hypothetical pr... 241 3e-64
Z66495-14|CAH04729.1| 353|Caenorhabditis elegans Hypothetical p... 176 1e-44
Z49936-7|CAH10799.1| 353|Caenorhabditis elegans Hypothetical pr... 176 1e-44
Z66495-15|CAH04728.1| 303|Caenorhabditis elegans Hypothetical p... 117 6e-27
Z49936-8|CAH10798.1| 303|Caenorhabditis elegans Hypothetical pr... 117 6e-27
AF003146-5|AAB54199.1| 299|Caenorhabditis elegans Hypothetical ... 30 1.3
AF043702-7|AAK21492.4| 1655|Caenorhabditis elegans Intestinal ne... 29 2.9
>Z69337-1|CAA93269.1| 401|Caenorhabditis elegans ribosomal protein
L3 protein.
Length = 401
Score = 241 bits (590), Expect = 3e-64
Identities = 112/208 (53%), Positives = 138/208 (66%)
Frame = +2
Query: 32 VAQKIFSTPXMGLWDSIPKRGPXXXXXXXXXXXKTTXXXXXXXXXXXXYKAGMTHVVREP 211
++ + FS P G PK+ K YKAGMTH+VR+
Sbjct: 1 MSHRKFSAPRHGHMGFTPKKRSRTYRGRIKAFPKDDKSKPIHLTAFLGYKAGMTHIVRDV 60
Query: 212 DRPGSKINKKEIVEAVTIIETPPMVCVGVVGYIETPHGLRALLTVWAEHMSEDCRRRFYK 391
D+PGSK+NKKE+VEAVTI+ETPPMV GV GY++TP G RAL T+WAEH+SE+ RRRFY
Sbjct: 61 DKPGSKVNKKEVVEAVTIVETPPMVIAGVTGYVDTPQGPRALTTIWAEHLSEEARRRFYS 120
Query: 392 NWYXXXXXXXXXXXXXWQDELGRKSIEKDFKKMIRYCSVVRVIAHTQMKLLKQRQKKAHI 571
NW WQDE G+K IE DF K+ +YCS +RVIAHTQMK+L++RQKKAH+
Sbjct: 121 NWAKSKKKAFTKYAKKWQDEDGKKLIEADFAKLKKYCSSIRVIAHTQMKILRRRQKKAHL 180
Query: 572 MEIQLNGGTIEDKVKWAREHLEKPIPVD 655
+EIQ+NGGTIE KV WAREHLEK + VD
Sbjct: 181 VEIQVNGGTIEQKVDWAREHLEKQVQVD 208
>Z69336-1|CAA93268.1| 401|Caenorhabditis elegans ribosomal protein
L3 protein.
Length = 401
Score = 241 bits (590), Expect = 3e-64
Identities = 112/208 (53%), Positives = 138/208 (66%)
Frame = +2
Query: 32 VAQKIFSTPXMGLWDSIPKRGPXXXXXXXXXXXKTTXXXXXXXXXXXXYKAGMTHVVREP 211
++ + FS P G PK+ K YKAGMTH+VR+
Sbjct: 1 MSHRKFSAPRHGHMGFTPKKRSRTYRGRIKAFPKDDKSKPIHLTAFLGYKAGMTHIVRDV 60
Query: 212 DRPGSKINKKEIVEAVTIIETPPMVCVGVVGYIETPHGLRALLTVWAEHMSEDCRRRFYK 391
D+PGSK+NKKE+VEAVTI+ETPPMV GV GY++TP G RAL T+WAEH+SE+ RRRFY
Sbjct: 61 DKPGSKVNKKEVVEAVTIVETPPMVIAGVTGYVDTPQGPRALTTIWAEHLSEEARRRFYS 120
Query: 392 NWYXXXXXXXXXXXXXWQDELGRKSIEKDFKKMIRYCSVVRVIAHTQMKLLKQRQKKAHI 571
NW WQDE G+K IE DF K+ +YCS +RVIAHTQMK+L++RQKKAH+
Sbjct: 121 NWAKSKKKAFTKYAKKWQDEDGKKLIEADFAKLKKYCSSIRVIAHTQMKILRRRQKKAHL 180
Query: 572 MEIQLNGGTIEDKVKWAREHLEKPIPVD 655
+EIQ+NGGTIE KV WAREHLEK + VD
Sbjct: 181 VEIQVNGGTIEQKVDWAREHLEKQVQVD 208
>Z66495-12|CAA91277.1| 401|Caenorhabditis elegans Hypothetical
protein F13B10.2a protein.
Length = 401
Score = 241 bits (590), Expect = 3e-64
Identities = 112/208 (53%), Positives = 138/208 (66%)
Frame = +2
Query: 32 VAQKIFSTPXMGLWDSIPKRGPXXXXXXXXXXXKTTXXXXXXXXXXXXYKAGMTHVVREP 211
++ + FS P G PK+ K YKAGMTH+VR+
Sbjct: 1 MSHRKFSAPRHGHMGFTPKKRSRTYRGRIKAFPKDDKSKPIHLTAFLGYKAGMTHIVRDV 60
Query: 212 DRPGSKINKKEIVEAVTIIETPPMVCVGVVGYIETPHGLRALLTVWAEHMSEDCRRRFYK 391
D+PGSK+NKKE+VEAVTI+ETPPMV GV GY++TP G RAL T+WAEH+SE+ RRRFY
Sbjct: 61 DKPGSKVNKKEVVEAVTIVETPPMVIAGVTGYVDTPQGPRALTTIWAEHLSEEARRRFYS 120
Query: 392 NWYXXXXXXXXXXXXXWQDELGRKSIEKDFKKMIRYCSVVRVIAHTQMKLLKQRQKKAHI 571
NW WQDE G+K IE DF K+ +YCS +RVIAHTQMK+L++RQKKAH+
Sbjct: 121 NWAKSKKKAFTKYAKKWQDEDGKKLIEADFAKLKKYCSSIRVIAHTQMKILRRRQKKAHL 180
Query: 572 MEIQLNGGTIEDKVKWAREHLEKPIPVD 655
+EIQ+NGGTIE KV WAREHLEK + VD
Sbjct: 181 VEIQVNGGTIEQKVDWAREHLEKQVQVD 208
>Z49936-6|CAA90183.1| 401|Caenorhabditis elegans Hypothetical
protein F13B10.2a protein.
Length = 401
Score = 241 bits (590), Expect = 3e-64
Identities = 112/208 (53%), Positives = 138/208 (66%)
Frame = +2
Query: 32 VAQKIFSTPXMGLWDSIPKRGPXXXXXXXXXXXKTTXXXXXXXXXXXXYKAGMTHVVREP 211
++ + FS P G PK+ K YKAGMTH+VR+
Sbjct: 1 MSHRKFSAPRHGHMGFTPKKRSRTYRGRIKAFPKDDKSKPIHLTAFLGYKAGMTHIVRDV 60
Query: 212 DRPGSKINKKEIVEAVTIIETPPMVCVGVVGYIETPHGLRALLTVWAEHMSEDCRRRFYK 391
D+PGSK+NKKE+VEAVTI+ETPPMV GV GY++TP G RAL T+WAEH+SE+ RRRFY
Sbjct: 61 DKPGSKVNKKEVVEAVTIVETPPMVIAGVTGYVDTPQGPRALTTIWAEHLSEEARRRFYS 120
Query: 392 NWYXXXXXXXXXXXXXWQDELGRKSIEKDFKKMIRYCSVVRVIAHTQMKLLKQRQKKAHI 571
NW WQDE G+K IE DF K+ +YCS +RVIAHTQMK+L++RQKKAH+
Sbjct: 121 NWAKSKKKAFTKYAKKWQDEDGKKLIEADFAKLKKYCSSIRVIAHTQMKILRRRQKKAHL 180
Query: 572 MEIQLNGGTIEDKVKWAREHLEKPIPVD 655
+EIQ+NGGTIE KV WAREHLEK + VD
Sbjct: 181 VEIQVNGGTIEQKVDWAREHLEKQVQVD 208
>Z66495-14|CAH04729.1| 353|Caenorhabditis elegans Hypothetical
protein F13B10.2c protein.
Length = 353
Score = 176 bits (428), Expect = 1e-44
Identities = 83/168 (49%), Positives = 102/168 (60%)
Frame = +2
Query: 32 VAQKIFSTPXMGLWDSIPKRGPXXXXXXXXXXXKTTXXXXXXXXXXXXYKAGMTHVVREP 211
++ + FS P G PK+ K YKAGMTH+VR+
Sbjct: 1 MSHRKFSAPRHGHMGFTPKKRSRTYRGRIKAFPKDDKSKPIHLTAFLGYKAGMTHIVRDV 60
Query: 212 DRPGSKINKKEIVEAVTIIETPPMVCVGVVGYIETPHGLRALLTVWAEHMSEDCRRRFYK 391
D+PGSK+NKKE+VEAVTI+ETPPMV GV GY++TP G RAL T+WAEH+SE+ RRRFY
Sbjct: 61 DKPGSKVNKKEVVEAVTIVETPPMVIAGVTGYVDTPQGPRALTTIWAEHLSEEARRRFYS 120
Query: 392 NWYXXXXXXXXXXXXXWQDELGRKSIEKDFKKMIRYCSVVRVIAHTQM 535
NW WQDE G+K IE DF K+ +YCS +RVIAHTQM
Sbjct: 121 NWAKSKKKAFTKYAKKWQDEDGKKLIEADFAKLKKYCSSIRVIAHTQM 168
>Z49936-7|CAH10799.1| 353|Caenorhabditis elegans Hypothetical
protein F13B10.2c protein.
Length = 353
Score = 176 bits (428), Expect = 1e-44
Identities = 83/168 (49%), Positives = 102/168 (60%)
Frame = +2
Query: 32 VAQKIFSTPXMGLWDSIPKRGPXXXXXXXXXXXKTTXXXXXXXXXXXXYKAGMTHVVREP 211
++ + FS P G PK+ K YKAGMTH+VR+
Sbjct: 1 MSHRKFSAPRHGHMGFTPKKRSRTYRGRIKAFPKDDKSKPIHLTAFLGYKAGMTHIVRDV 60
Query: 212 DRPGSKINKKEIVEAVTIIETPPMVCVGVVGYIETPHGLRALLTVWAEHMSEDCRRRFYK 391
D+PGSK+NKKE+VEAVTI+ETPPMV GV GY++TP G RAL T+WAEH+SE+ RRRFY
Sbjct: 61 DKPGSKVNKKEVVEAVTIVETPPMVIAGVTGYVDTPQGPRALTTIWAEHLSEEARRRFYS 120
Query: 392 NWYXXXXXXXXXXXXXWQDELGRKSIEKDFKKMIRYCSVVRVIAHTQM 535
NW WQDE G+K IE DF K+ +YCS +RVIAHTQM
Sbjct: 121 NWAKSKKKAFTKYAKKWQDEDGKKLIEADFAKLKKYCSSIRVIAHTQM 168
>Z66495-15|CAH04728.1| 303|Caenorhabditis elegans Hypothetical
protein F13B10.2d protein.
Length = 303
Score = 117 bits (282), Expect = 6e-27
Identities = 51/72 (70%), Positives = 62/72 (86%)
Frame = +2
Query: 440 WQDELGRKSIEKDFKKMIRYCSVVRVIAHTQMKLLKQRQKKAHIMEIQLNGGTIEDKVKW 619
WQDE G+K IE DF K+ +YCS +RVIAHTQMK+L++RQKKAH++EIQ+NGGTIE KV W
Sbjct: 39 WQDEDGKKLIEADFAKLKKYCSSIRVIAHTQMKILRRRQKKAHLVEIQVNGGTIEQKVDW 98
Query: 620 AREHLEKPIPVD 655
AREHLEK + VD
Sbjct: 99 AREHLEKQVQVD 110
Score = 46.4 bits (105), Expect = 2e-05
Identities = 19/29 (65%), Positives = 22/29 (75%)
Frame = +1
Query: 46 FQHPXHGSMGFYPKKRSRRHRGKVKAFPK 132
F P HG MGF PKKRSR +RG++KAF K
Sbjct: 6 FSAPRHGHMGFTPKKRSRTYRGRIKAFTK 34
>Z49936-8|CAH10798.1| 303|Caenorhabditis elegans Hypothetical
protein F13B10.2d protein.
Length = 303
Score = 117 bits (282), Expect = 6e-27
Identities = 51/72 (70%), Positives = 62/72 (86%)
Frame = +2
Query: 440 WQDELGRKSIEKDFKKMIRYCSVVRVIAHTQMKLLKQRQKKAHIMEIQLNGGTIEDKVKW 619
WQDE G+K IE DF K+ +YCS +RVIAHTQMK+L++RQKKAH++EIQ+NGGTIE KV W
Sbjct: 39 WQDEDGKKLIEADFAKLKKYCSSIRVIAHTQMKILRRRQKKAHLVEIQVNGGTIEQKVDW 98
Query: 620 AREHLEKPIPVD 655
AREHLEK + VD
Sbjct: 99 AREHLEKQVQVD 110
Score = 46.4 bits (105), Expect = 2e-05
Identities = 19/29 (65%), Positives = 22/29 (75%)
Frame = +1
Query: 46 FQHPXHGSMGFYPKKRSRRHRGKVKAFPK 132
F P HG MGF PKKRSR +RG++KAF K
Sbjct: 6 FSAPRHGHMGFTPKKRSRTYRGRIKAFTK 34
>AF003146-5|AAB54199.1| 299|Caenorhabditis elegans Hypothetical
protein F56F4.2 protein.
Length = 299
Score = 30.3 bits (65), Expect = 1.3
Identities = 13/43 (30%), Positives = 20/43 (46%)
Frame = +2
Query: 272 TPPMVCVGVVGYIETPHGLRALLTVWAEHMSEDCRRRFYKNWY 400
T P + GY++ G+R VW E S+ + KNW+
Sbjct: 201 TDPNGYFDIAGYVDQSSGVRGRFWVWHECFSQKYHKDPCKNWF 243
>AF043702-7|AAK21492.4| 1655|Caenorhabditis elegans Intestinal
neurexin-like protein 1 protein.
Length = 1655
Score = 29.1 bits (62), Expect = 2.9
Identities = 17/56 (30%), Positives = 25/56 (44%)
Frame = +1
Query: 253 GCHHHRDSSDGLCRCCWIH*DPSWTTRSVDCLGGAYV*RLSTSLLQKLVQMQEEGF 420
GC + G C W + DPS T + DC +Y ++ L + V M+ GF
Sbjct: 1160 GCSSITCLNGGHCSVAWANTDPSAATTTCDCSRTSYT--GASCSLDEGVHMERSGF 1213
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,744,170
Number of Sequences: 27780
Number of extensions: 328801
Number of successful extensions: 891
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 824
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 879
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1465835342
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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