Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP07_F_J14
         (316 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1718.01 |pop1|ste16, SPBC2G2.18|F-box/WD repeat protein Pop1...    29   0.17 
SPBP35G2.11c |||transcription related zf-ZZ type zinc finger pro...    26   1.2  
SPCC70.05c |||serine/threonine protein kinase |Schizosaccharomyc...    25   2.0  
SPAC144.15c |cog1||Golgi transport complex subunit Cog1 |Schizos...    24   4.7  
SPAC3H5.09c |||conserved fungal protein|Schizosaccharomyces pomb...    24   6.3  
SPAC12G12.09 |||sequence orphan|Schizosaccharomyces pombe|chr 1|...    24   6.3  
SPBC19C7.08c |||leucine carboxyl methyltransferase|Schizosacchar...    23   8.3  
SPCC126.03 |pus1|SPCC126.03, SPCC126.03|tRNA pseudouridylate syn...    23   8.3  

>SPBC1718.01 |pop1|ste16, SPBC2G2.18|F-box/WD repeat protein
           Pop1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 775

 Score = 29.1 bits (62), Expect = 0.17
 Identities = 12/27 (44%), Positives = 17/27 (62%)
 Frame = -2

Query: 90  NSSSNNEKTRKNFVPHYSKFSYPKLHK 10
           N   N+ KTR++F PH S  S+  LH+
Sbjct: 199 NLLGNDSKTRQSFPPHSSSSSHNSLHE 225


>SPBP35G2.11c |||transcription related zf-ZZ type zinc finger
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 397

 Score = 26.2 bits (55), Expect = 1.2
 Identities = 11/35 (31%), Positives = 18/35 (51%)
 Frame = -2

Query: 264 FTTSIIRDSFQAIHFIRITSKPHIPLVQRTTPSIS 160
           F   + RD +    F+    KPH  LV+ + PS++
Sbjct: 80  FDFDVCRDCYAKQAFLHPCPKPHFVLVRSSIPSVA 114


>SPCC70.05c |||serine/threonine protein kinase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 781

 Score = 25.4 bits (53), Expect = 2.0
 Identities = 14/35 (40%), Positives = 18/35 (51%)
 Frame = -2

Query: 120 YMIKTPAR*TNSSSNNEKTRKNFVPHYSKFSYPKL 16
           Y IK P   TN S    K +  F+P Y+K   P+L
Sbjct: 408 YPIKPP---TNISEIPRKLKSGFIPPYAKRVVPRL 439


>SPAC144.15c |cog1||Golgi transport complex subunit Cog1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 701

 Score = 24.2 bits (50), Expect = 4.7
 Identities = 11/29 (37%), Positives = 17/29 (58%)
 Frame = +1

Query: 28  REFRIMWYEILPSFFIITAAVGLPGWGLY 114
           +EF  +W  IL + FII++   +   GLY
Sbjct: 342 KEFYELWNSILQNHFIISSRNIIDSLGLY 370


>SPAC3H5.09c |||conserved fungal protein|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 2685

 Score = 23.8 bits (49), Expect = 6.3
 Identities = 10/31 (32%), Positives = 13/31 (41%)
 Frame = -2

Query: 99   R*TNSSSNNEKTRKNFVPHYSKFSYPKLHKC 7
            R T     NEK  K  +P   +F     H+C
Sbjct: 1702 RHTKCHRRNEKNEKEIIPDTCRFGDEFTHRC 1732


>SPAC12G12.09 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 977

 Score = 23.8 bits (49), Expect = 6.3
 Identities = 9/20 (45%), Positives = 14/20 (70%)
 Frame = -2

Query: 84  SSNNEKTRKNFVPHYSKFSY 25
           SS+ E+TRK F  H++ F +
Sbjct: 78  SSSYEQTRKPFFHHFNPFEF 97


>SPBC19C7.08c |||leucine carboxyl
           methyltransferase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 681

 Score = 23.4 bits (48), Expect = 8.3
 Identities = 9/20 (45%), Positives = 14/20 (70%)
 Frame = -1

Query: 304 LHSTHLLNTN*IIFYYFNYP 245
           L S+H  NT+ ++FY  +YP
Sbjct: 102 LLSSHEYNTDDVVFYDVDYP 121


>SPCC126.03 |pus1|SPCC126.03, SPCC126.03|tRNA pseudouridylate
           synthase Lsp1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 534

 Score = 23.4 bits (48), Expect = 8.3
 Identities = 9/36 (25%), Positives = 20/36 (55%)
 Frame = +1

Query: 106 GLYHIHNLTLGNHYRRSLTDRWSRALYQRDMRLTGN 213
           G+++ HN T+G  + +  ++R  R+    D  + G+
Sbjct: 333 GVHNFHNFTVGQAFHQKNSNRVIRSFTASDPFMIGD 368


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,240,589
Number of Sequences: 5004
Number of extensions: 22043
Number of successful extensions: 45
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 45
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 45
length of database: 2,362,478
effective HSP length: 63
effective length of database: 2,047,226
effective search space used: 83936266
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)