Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP07_F_J14
         (316 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z79604-3|CAD36502.1|  817|Caenorhabditis elegans Hypothetical pr...    29   0.93 
Z79604-2|CAB01900.1|  780|Caenorhabditis elegans Hypothetical pr...    29   0.93 
AF332205-1|AAK17976.1|  817|Caenorhabditis elegans nuclear recep...    29   0.93 
Z83231-3|CAB05751.1|  247|Caenorhabditis elegans Hypothetical pr...    28   1.2  
AF078157-17|AAG24072.1| 1062|Caenorhabditis elegans Hypothetical...    26   5.0  
Z82285-7|CAB05301.1|  548|Caenorhabditis elegans Hypothetical pr...    25   8.7  
U39648-4|AAK39290.1|  220|Caenorhabditis elegans Hypothetical pr...    25   8.7  

>Z79604-3|CAD36502.1|  817|Caenorhabditis elegans Hypothetical
           protein ZK662.3b protein.
          Length = 817

 Score = 28.7 bits (61), Expect = 0.93
 Identities = 16/46 (34%), Positives = 24/46 (52%)
 Frame = -1

Query: 238 LPSHSLHKDYQ*ASYPSGTTHDSIYQ*ASVYNDCLKSDYVYDKDPS 101
           LP  SLH+++Q   Y + T    +    S+YND  K D  Y+ + S
Sbjct: 19  LPPQSLHQNWQDTEYVNTTCSSDMNSDMSMYNDD-KDDPFYEDEGS 63


>Z79604-2|CAB01900.1|  780|Caenorhabditis elegans Hypothetical
           protein ZK662.3a protein.
          Length = 780

 Score = 28.7 bits (61), Expect = 0.93
 Identities = 16/46 (34%), Positives = 24/46 (52%)
 Frame = -1

Query: 238 LPSHSLHKDYQ*ASYPSGTTHDSIYQ*ASVYNDCLKSDYVYDKDPS 101
           LP  SLH+++Q   Y + T    +    S+YND  K D  Y+ + S
Sbjct: 19  LPPQSLHQNWQDTEYVNTTCSSDMNSDMSMYNDD-KDDPFYEDEGS 63


>AF332205-1|AAK17976.1|  817|Caenorhabditis elegans nuclear receptor
           NHR-48 protein.
          Length = 817

 Score = 28.7 bits (61), Expect = 0.93
 Identities = 16/46 (34%), Positives = 24/46 (52%)
 Frame = -1

Query: 238 LPSHSLHKDYQ*ASYPSGTTHDSIYQ*ASVYNDCLKSDYVYDKDPS 101
           LP  SLH+++Q   Y + T    +    S+YND  K D  Y+ + S
Sbjct: 19  LPPQSLHQNWQDTEYVNTTCSSDMNSDMSMYNDD-KDDPFYEDEGS 63


>Z83231-3|CAB05751.1|  247|Caenorhabditis elegans Hypothetical
           protein F57G9.3 protein.
          Length = 247

 Score = 28.3 bits (60), Expect = 1.2
 Identities = 7/10 (70%), Positives = 9/10 (90%)
 Frame = +3

Query: 63  EFFHYYCCCW 92
           EF+H+Y CCW
Sbjct: 161 EFYHFYMCCW 170


>AF078157-17|AAG24072.1| 1062|Caenorhabditis elegans Hypothetical
            protein F25E5.1 protein.
          Length = 1062

 Score = 26.2 bits (55), Expect = 5.0
 Identities = 16/62 (25%), Positives = 28/62 (45%)
 Frame = +1

Query: 49   YEILPSFFIITAAVGLPGWGLYHIHNLTLGNHYRRSLTDRWSRALYQRDMRLTGNPYEVN 228
            Y I+   FI     G+  W    I N  +  H+ R +T+ W +  ++R  R+    +  N
Sbjct: 897  YPIMTQRFIAQYRPGIILWHRSPIPNPQI--HHVRIITEMWPKNDFERTTRIPRKKFIKN 954

Query: 229  GL 234
            G+
Sbjct: 955  GI 956


>Z82285-7|CAB05301.1|  548|Caenorhabditis elegans Hypothetical
           protein T28F3.8 protein.
          Length = 548

 Score = 25.4 bits (53), Expect = 8.7
 Identities = 10/19 (52%), Positives = 13/19 (68%)
 Frame = +1

Query: 70  FIITAAVGLPGWGLYHIHN 126
           F IT +VGL GWG ++  N
Sbjct: 269 FTITISVGLNGWGNFNYTN 287


>U39648-4|AAK39290.1|  220|Caenorhabditis elegans Hypothetical
           protein T13C5.4 protein.
          Length = 220

 Score = 25.4 bits (53), Expect = 8.7
 Identities = 9/16 (56%), Positives = 13/16 (81%)
 Frame = +1

Query: 175 RALYQRDMRLTGNPYE 222
           RA Y+R+ + TG+PYE
Sbjct: 96  RAKYRREQKQTGHPYE 111


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,665,180
Number of Sequences: 27780
Number of extensions: 118457
Number of successful extensions: 270
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 268
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 270
length of database: 12,740,198
effective HSP length: 71
effective length of database: 10,767,818
effective search space used: 355337994
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)