Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP07_F_J10
         (655 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              27   0.21 
AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase...    25   0.64 
AF205594-1|AAQ13840.1|  156|Apis mellifera acid phosphatase prec...    22   6.0  
AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.          21   7.9  

>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 26.6 bits (56), Expect = 0.21
 Identities = 16/37 (43%), Positives = 20/37 (54%)
 Frame = +1

Query: 217 SDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL 327
           +DT+   K KI  K  I PD + L+   KQ E G TL
Sbjct: 732 TDTVLAYKPKILGKPTISPDSRHLVTLDKQ-ETGVTL 767



 Score = 26.6 bits (56), Expect = 0.21
 Identities = 16/37 (43%), Positives = 20/37 (54%)
 Frame = +1

Query: 445 SDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL 555
           +DT+   K KI  K  I PD + L+   KQ E G TL
Sbjct: 732 TDTVLAYKPKILGKPTISPDSRHLVTLDKQ-ETGVTL 767


>AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase
           protein.
          Length = 1143

 Score = 25.0 bits (52), Expect = 0.64
 Identities = 9/21 (42%), Positives = 13/21 (61%)
 Frame = +3

Query: 555 VRLQHSKRIHTPSGTASSWEA 617
           + LQ  K+ HTP+G   +W A
Sbjct: 785 IELQIQKQSHTPNGIVKTWIA 805



 Score = 23.0 bits (47), Expect = 2.6
 Identities = 8/19 (42%), Positives = 12/19 (63%)
 Frame = +3

Query: 327 VRLQHSKRIHTPSCIASSW 383
           + LQ  K+ HTP+ I  +W
Sbjct: 785 IELQIQKQSHTPNGIVKTW 803


>AF205594-1|AAQ13840.1|  156|Apis mellifera acid phosphatase
           precursor protein.
          Length = 156

 Score = 21.8 bits (44), Expect = 6.0
 Identities = 10/20 (50%), Positives = 12/20 (60%)
 Frame = -2

Query: 510 LLIRRNSFFVLDLRLHILNC 451
           LLIR  SF +L+  L   NC
Sbjct: 137 LLIRFKSFSLLNFNLLFFNC 156



 Score = 21.8 bits (44), Expect = 6.0
 Identities = 10/20 (50%), Positives = 12/20 (60%)
 Frame = -2

Query: 282 LLIRRNSFFVLDLRLHILNC 223
           LLIR  SF +L+  L   NC
Sbjct: 137 LLIRFKSFSLLNFNLLFFNC 156


>AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.
          Length = 652

 Score = 21.4 bits (43), Expect = 7.9
 Identities = 8/19 (42%), Positives = 10/19 (52%)
 Frame = -1

Query: 646 SGQSFHEDLHASHEDAVPD 590
           S   FH+    +H  AVPD
Sbjct: 627 SSPHFHQSPSQNHSSAVPD 645


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 190,134
Number of Sequences: 438
Number of extensions: 4214
Number of successful extensions: 7
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19804986
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)