Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP07_F_J04
(657 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AC024200-4|AAF36008.1| 216|Caenorhabditis elegans Ribosomal pro... 228 2e-60
AJ270980-1|CAB65902.1| 186|Caenorhabditis elegans 60s ribosomal... 188 4e-48
AC024200-5|AAK66025.1| 155|Caenorhabditis elegans Ribosomal pro... 142 2e-34
Z81576-2|CAB04644.1| 522|Caenorhabditis elegans Hypothetical pr... 33 0.13
Z70212-2|CAA94163.1| 430|Caenorhabditis elegans Hypothetical pr... 29 2.9
AF099915-5|AAC68770.1| 118|Caenorhabditis elegans Hypothetical ... 29 2.9
Z54236-4|CAA90984.1| 1274|Caenorhabditis elegans Hypothetical pr... 28 5.1
AF038613-11|AAB92054.2| 836|Caenorhabditis elegans Mammalian el... 27 8.9
>AC024200-4|AAF36008.1| 216|Caenorhabditis elegans Ribosomal
protein, large subunitprotein 1, isoform a protein.
Length = 216
Score = 228 bits (558), Expect = 2e-60
Identities = 109/188 (57%), Positives = 133/188 (70%)
Frame = +1
Query: 58 SKVSRDTLYECVNAVLQSSKDKKRNFLETVELQIGLKNYDPQKDKRFSGTVKLKYIPRPK 237
SKVSR++L E + VL+ S +K R F ET+ELQIGLKNYDPQKDKRFSG+++LK+IPRP
Sbjct: 2 SKVSRESLNEAIAEVLKGSSEKPRKFRETIELQIGLKNYDPQKDKRFSGSIRLKHIPRPN 61
Query: 238 MQVCVLGDQQHCDEAKTLNVPCMXXXXXXXXXXXXXXXXXXXXXXXXXXXSESLIKQIPR 417
M+VCV GDQ H DEA ++P M SESLIKQIPR
Sbjct: 62 MKVCVFGDQHHLDEAAAGDIPSMSADDLKKLNKQKKLIKKLAKSYDAFIASESLIKQIPR 121
Query: 418 LLGPGLNKAGKFPGLLSHQESMTQKIDEVKGTIKFQMKKVLCLSVAVGHVDMTPDELAQN 597
+LGPGLNKAGKFP +++H ES+ K DE++ T+KFQMKKVLCLSVAVGHV +T +EL N
Sbjct: 122 ILGPGLNKAGKFPSVVTHGESLQSKSDEIRATVKFQMKKVLCLSVAVGHVGLTQEELVSN 181
Query: 598 VHLSINFL 621
+ LSINFL
Sbjct: 182 ISLSINFL 189
>AJ270980-1|CAB65902.1| 186|Caenorhabditis elegans 60s ribosomal
protein L10A protein.
Length = 186
Score = 188 bits (457), Expect = 4e-48
Identities = 88/152 (57%), Positives = 106/152 (69%)
Frame = +1
Query: 166 KNYDPQKDKRFSGTVKLKYIPRPKMQVCVLGDQQHCDEAKTLNVPCMXXXXXXXXXXXXX 345
KNYDPQKDKRFSG+++LK+IPRP M+VCV GDQ H DEA ++P M
Sbjct: 8 KNYDPQKDKRFSGSIRLKHIPRPNMKVCVFGDQHHLDEAAAGDIPSMSADDLKKLNKQKK 67
Query: 346 XXXXXXXXXXXXXXSESLIKQIPRLLGPGLNKAGKFPGLLSHQESMTQKIDEVKGTIKFQ 525
SESLIKQIPR+LGPGLNKAGKFP +++H ES+ K DE++ T+KFQ
Sbjct: 68 LIKKLAKSYDAFIASESLIKQIPRILGPGLNKAGKFPSVVTHGESLQSKSDEIRATVKFQ 127
Query: 526 MKKVLCLSVAVGHVDMTPDELAQNVHLSINFL 621
MKKVLCLSVAVGHV +T +EL N+ LSINFL
Sbjct: 128 MKKVLCLSVAVGHVGLTQEELVSNISLSINFL 159
>AC024200-5|AAK66025.1| 155|Caenorhabditis elegans Ribosomal
protein, large subunitprotein 1, isoform b protein.
Length = 155
Score = 142 bits (344), Expect = 2e-34
Identities = 69/128 (53%), Positives = 83/128 (64%)
Frame = +1
Query: 238 MQVCVLGDQQHCDEAKTLNVPCMXXXXXXXXXXXXXXXXXXXXXXXXXXXSESLIKQIPR 417
M+VCV GDQ H DEA ++P M SESLIKQIPR
Sbjct: 1 MKVCVFGDQHHLDEAAAGDIPSMSADDLKKLNKQKKLIKKLAKSYDAFIASESLIKQIPR 60
Query: 418 LLGPGLNKAGKFPGLLSHQESMTQKIDEVKGTIKFQMKKVLCLSVAVGHVDMTPDELAQN 597
+LGPGLNKAGKFP +++H ES+ K DE++ T+KFQMKKVLCLSVAVGHV +T +EL N
Sbjct: 61 ILGPGLNKAGKFPSVVTHGESLQSKSDEIRATVKFQMKKVLCLSVAVGHVGLTQEELVSN 120
Query: 598 VHLSINFL 621
+ LSINFL
Sbjct: 121 ISLSINFL 128
>Z81576-2|CAB04644.1| 522|Caenorhabditis elegans Hypothetical
protein R10E8.3 protein.
Length = 522
Score = 33.5 bits (73), Expect = 0.13
Identities = 25/77 (32%), Positives = 37/77 (48%), Gaps = 2/77 (2%)
Frame = -1
Query: 633 SSDTKEVDGKMHILSKLIRSHVHMANCYRKTQHLLHLELNGS--LDFINLLRHGLLVGEK 460
S +T D + + L K+ + + + +R + HLEL GS L+FI LL L +K
Sbjct: 322 SFETFHCDFERYTLEKMQNLGIFLGS-FRNKISMAHLELKGSSELEFIQLL--DCLDAKK 378
Query: 459 TREFTSFVQTGTQQTGN 409
R+ T F G GN
Sbjct: 379 LRKLTIFATVGDVNNGN 395
>Z70212-2|CAA94163.1| 430|Caenorhabditis elegans Hypothetical
protein R04D3.3 protein.
Length = 430
Score = 29.1 bits (62), Expect = 2.9
Identities = 20/63 (31%), Positives = 34/63 (53%)
Frame = +1
Query: 7 YNLPSVVIGGSLTNKMSSKVSRDTLYECVNAVLQSSKDKKRNFLETVELQIGLKNYDPQK 186
Y++ S V G S+ + ++S +D+L E ++ + +S K K LET+ Q G K D
Sbjct: 183 YHIGSQVGGSSMEDVLTSD-EKDSLSEAISNLPKSPKSKTDRDLETL-AQSGSKTRDSHS 240
Query: 187 DKR 195
+R
Sbjct: 241 RRR 243
>AF099915-5|AAC68770.1| 118|Caenorhabditis elegans Hypothetical
protein E02H9.4 protein.
Length = 118
Score = 29.1 bits (62), Expect = 2.9
Identities = 15/37 (40%), Positives = 21/37 (56%)
Frame = +1
Query: 115 KDKKRNFLETVELQIGLKNYDPQKDKRFSGTVKLKYI 225
K +K N E VEL +KNY P+ + R V+ KY+
Sbjct: 41 KGEKYNGNEKVELTTTVKNYKPKNNTRKWPAVEAKYL 77
>Z54236-4|CAA90984.1| 1274|Caenorhabditis elegans Hypothetical
protein C27B7.4 protein.
Length = 1274
Score = 28.3 bits (60), Expect = 5.1
Identities = 22/68 (32%), Positives = 33/68 (48%), Gaps = 2/68 (2%)
Frame = -1
Query: 645 QCFLSS--DTKEVDGKMHILSKLIRSHVHMANCYRKTQHLLHLELNGSLDFINLLRHGLL 472
QC SS D K + H+L +L++ V R+T HLL L S +++ LLR +
Sbjct: 532 QCVDSSPDDVKIALQRTHVLVELVKGFVQ-----RRTHHLLKKILPESKEYVLLLRKSQI 586
Query: 471 VGEKTREF 448
+ R F
Sbjct: 587 QRQLYRNF 594
>AF038613-11|AAB92054.2| 836|Caenorhabditis elegans Mammalian
elks/cast/erc/rab6 interactingprotein homolog protein 1
protein.
Length = 836
Score = 27.5 bits (58), Expect = 8.9
Identities = 13/40 (32%), Positives = 23/40 (57%)
Frame = +1
Query: 400 IKQIPRLLGPGLNKAGKFPGLLSHQESMTQKIDEVKGTIK 519
I +IP G GLN A ++ L ++M +K+++ +IK
Sbjct: 142 ISRIPTGTGSGLNIAREYEQLKVEYDTMMEKLNQTMNSIK 181
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.386
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,571,080
Number of Sequences: 27780
Number of extensions: 333536
Number of successful extensions: 823
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 787
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 820
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1465835342
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -