Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP07_F_J02
(432 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AC024833-1|AAK85505.1| 79|Caenorhabditis elegans Hypothetical ... 50 9e-07
AF068709-13|AAO26012.1| 321|Caenorhabditis elegans Serpentine r... 28 3.3
U22831-11|AAL65783.1| 627|Caenorhabditis elegans G-protein-link... 27 4.4
AY053365-1|AAL15153.1| 627|Caenorhabditis elegans G-protein-lin... 27 4.4
U28737-5|AAA68274.1| 684|Caenorhabditis elegans Na/h exchanger ... 27 7.7
U28737-4|AAM48522.1| 749|Caenorhabditis elegans Na/h exchanger ... 27 7.7
AF497827-1|AAM18105.1| 684|Caenorhabditis elegans putative Na-H... 27 7.7
AF497826-1|AAM18104.1| 749|Caenorhabditis elegans putative Na-H... 27 7.7
>AC024833-1|AAK85505.1| 79|Caenorhabditis elegans Hypothetical
protein Y57E12AM.1 protein.
Length = 79
Score = 49.6 bits (113), Expect = 9e-07
Identities = 26/79 (32%), Positives = 39/79 (49%)
Frame = +2
Query: 104 LEIESMIRYTSPINPAVFPHXXXXXXXXXXXXXAWFFVYEVTSTKASRDMFKELLLSLVA 283
++I M RYT+P+N A P A F + +VTSTK +R++ KEL ++ +
Sbjct: 1 MDISKMNRYTAPVNFASLPLLTTFLCGVGLLLLATFTMIQVTSTKYNRNLLKELFIAATS 60
Query: 284 AXXXXXXXXXXXXWVGIYV 340
+ WVGIYV
Sbjct: 61 SVFLGFGSVFLLLWVGIYV 79
>AF068709-13|AAO26012.1| 321|Caenorhabditis elegans Serpentine
receptor, class g (gamma)protein 56 protein.
Length = 321
Score = 27.9 bits (59), Expect = 3.3
Identities = 11/19 (57%), Positives = 14/19 (73%)
Frame = +1
Query: 292 FWFRYFVLVAMGRDLCVIS 348
FWFRY+VLV+ G C+ S
Sbjct: 142 FWFRYYVLVSFG--FCIYS 158
>U22831-11|AAL65783.1| 627|Caenorhabditis elegans G-protein-linked
acetylcholinereceptor protein 2, isoform a protein.
Length = 627
Score = 27.5 bits (58), Expect = 4.4
Identities = 14/53 (26%), Positives = 29/53 (54%), Gaps = 5/53 (9%)
Frame = +1
Query: 181 RNRNILHGLVLRLRSYKY*S-----LKRYVQRVTFIIGGRLIFWFRYFVLVAM 324
+N+++L L R +Y S ++ ++ +TFI+G +I W ++VL +
Sbjct: 518 KNKSVLSALNFFQRKKEYKSRSENRARKALRTITFILGSFIILWTPFYVLATI 570
>AY053365-1|AAL15153.1| 627|Caenorhabditis elegans G-protein-linked
acetylcholinereceptor GAR-2b protein.
Length = 627
Score = 27.5 bits (58), Expect = 4.4
Identities = 14/53 (26%), Positives = 29/53 (54%), Gaps = 5/53 (9%)
Frame = +1
Query: 181 RNRNILHGLVLRLRSYKY*S-----LKRYVQRVTFIIGGRLIFWFRYFVLVAM 324
+N+++L L R +Y S ++ ++ +TFI+G +I W ++VL +
Sbjct: 518 KNKSVLSALNFFQRKKEYKSRSENRARKALRTITFILGSFIILWTPFYVLATI 570
>U28737-5|AAA68274.1| 684|Caenorhabditis elegans Na/h exchanger
protein 4, isoform b protein.
Length = 684
Score = 26.6 bits (56), Expect = 7.7
Identities = 21/66 (31%), Positives = 31/66 (46%), Gaps = 1/66 (1%)
Frame = +3
Query: 198 SRPGSSFTKLQVLKPQEICSKSYFYHWWPPYFL-VSVFCSCCYG*GFMCDINVRYNLSYE 374
S+ GSS ++ + + SY H + YF+ V+VFC Y C ++ YNL
Sbjct: 319 SKTGSSLSESCIFFYLGVSLVSY-NHEFDFYFIAVTVFCCTLYRFLVTCTLSAFYNLFAS 377
Query: 375 *CNTIP 392
N IP
Sbjct: 378 EKNRIP 383
>U28737-4|AAM48522.1| 749|Caenorhabditis elegans Na/h exchanger
protein 4, isoform a protein.
Length = 749
Score = 26.6 bits (56), Expect = 7.7
Identities = 21/66 (31%), Positives = 31/66 (46%), Gaps = 1/66 (1%)
Frame = +3
Query: 198 SRPGSSFTKLQVLKPQEICSKSYFYHWWPPYFL-VSVFCSCCYG*GFMCDINVRYNLSYE 374
S+ GSS ++ + + SY H + YF+ V+VFC Y C ++ YNL
Sbjct: 384 SKTGSSLSESCIFFYLGVSLVSY-NHEFDFYFIAVTVFCCTLYRFLVTCTLSAFYNLFAS 442
Query: 375 *CNTIP 392
N IP
Sbjct: 443 EKNRIP 448
>AF497827-1|AAM18105.1| 684|Caenorhabditis elegans putative Na-H
exchanger isoform 4b protein.
Length = 684
Score = 26.6 bits (56), Expect = 7.7
Identities = 21/66 (31%), Positives = 31/66 (46%), Gaps = 1/66 (1%)
Frame = +3
Query: 198 SRPGSSFTKLQVLKPQEICSKSYFYHWWPPYFL-VSVFCSCCYG*GFMCDINVRYNLSYE 374
S+ GSS ++ + + SY H + YF+ V+VFC Y C ++ YNL
Sbjct: 319 SKTGSSLSESCIFFYLGVSLVSY-NHEFDFYFIAVTVFCCTLYRFLVTCTLSAFYNLFAS 377
Query: 375 *CNTIP 392
N IP
Sbjct: 378 EKNRIP 383
>AF497826-1|AAM18104.1| 749|Caenorhabditis elegans putative Na-H
exchanger isoform 4a protein.
Length = 749
Score = 26.6 bits (56), Expect = 7.7
Identities = 21/66 (31%), Positives = 31/66 (46%), Gaps = 1/66 (1%)
Frame = +3
Query: 198 SRPGSSFTKLQVLKPQEICSKSYFYHWWPPYFL-VSVFCSCCYG*GFMCDINVRYNLSYE 374
S+ GSS ++ + + SY H + YF+ V+VFC Y C ++ YNL
Sbjct: 384 SKTGSSLSESCIFFYLGVSLVSY-NHEFDFYFIAVTVFCCTLYRFLVTCTLSAFYNLFAS 442
Query: 375 *CNTIP 392
N IP
Sbjct: 443 EKNRIP 448
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,823,969
Number of Sequences: 27780
Number of extensions: 170385
Number of successful extensions: 445
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 437
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 444
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 724655464
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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