Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP07_F_J01
         (668 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC2F7.06c |pol4||DNA polymerase X family|Schizosaccharomyces p...    30   0.35 
SPBC2F12.15c |||palmitoyltransferase|Schizosaccharomyces pombe|c...    29   0.80 
SPAC27F1.09c |prp10|sap155|U2 snRNP-associated protein Sap155|Sc...    26   4.3  
SPAC17G8.14c |pck1|SPAC22H10.01c|protein kinase C |Schizosacchar...    26   4.3  
SPBC56F2.05c |||transcription factor |Schizosaccharomyces pombe|...    25   7.5  
SPBC30B4.08 |eri1||double-strand siRNA ribonuclease|Schizosaccha...    25   9.9  

>SPAC2F7.06c |pol4||DNA polymerase X family|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 506

 Score = 29.9 bits (64), Expect = 0.35
 Identities = 15/70 (21%), Positives = 31/70 (44%)
 Frame = +2

Query: 326 VCANSTEHKMVNCFYDGPAKPIEEKAMKIIEQYCPEIAKGGYSCCNYEQLNQLKVNIALA 505
           + A+ST + + N   +   +    K +    ++  + AK  Y   NY Q+N+++  +   
Sbjct: 3   ILASSTNYVLHNRLSNSQYEDARSKIVNFGGEFTNDAAKADYIFVNYSQINRVRRELRTI 62

Query: 506 ENLLGRCPTC 535
              L  C +C
Sbjct: 63  GTPLETCVSC 72


>SPBC2F12.15c |||palmitoyltransferase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 329

 Score = 28.7 bits (61), Expect = 0.80
 Identities = 11/28 (39%), Positives = 14/28 (50%), Gaps = 2/28 (7%)
 Frame = +2

Query: 293 LAEDGHCIWYGVCANSTEHK--MVNCFY 370
           L  D HC+W+  C     HK   + CFY
Sbjct: 121 LRMDHHCMWFKNCVGFRNHKFFFLECFY 148


>SPAC27F1.09c |prp10|sap155|U2 snRNP-associated protein
           Sap155|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1188

 Score = 26.2 bits (55), Expect = 4.3
 Identities = 20/66 (30%), Positives = 31/66 (46%), Gaps = 1/66 (1%)
 Frame = -2

Query: 574 AGHSTDRLQKVLKARRASPQQIFRKGDIHFELVQLFVIAARITSFGYLGT-ILLNYFHCL 398
           A H T R+ K+L     SP +  +K  I  ++V        +T   YL T +L  +FHC 
Sbjct: 646 ASHFTRRIMKILLREFNSPDEEMKK--IVLKVVSQCASTDGVTP-EYLRTDVLPEFFHCF 702

Query: 397 FFDRFS 380
           +  R +
Sbjct: 703 WSRRMA 708


>SPAC17G8.14c |pck1|SPAC22H10.01c|protein kinase C
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 988

 Score = 26.2 bits (55), Expect = 4.3
 Identities = 20/58 (34%), Positives = 27/58 (46%), Gaps = 4/58 (6%)
 Frame = -1

Query: 557 SASKSSESTSGISPANFPQGRYSL*AGSVVRNCSTNNLL---WLSRDNIAQL-FSLPF 396
           SAS+S E  S   P N P    S+   S +   +   LL   WLS + + Q+  SL F
Sbjct: 323 SASRSDEKGSKSDPINAPNSSSSISTNSPLAPTAYYKLLSKSWLSLEPVGQICISLSF 380


>SPBC56F2.05c |||transcription factor |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 397

 Score = 25.4 bits (53), Expect = 7.5
 Identities = 14/31 (45%), Positives = 17/31 (54%)
 Frame = -1

Query: 602 ASSICSDRRRRPFHRSASKSSESTSGISPAN 510
           ASS  S +RRRP H   S    S+S  S A+
Sbjct: 269 ASSSTSAKRRRPDHNHTSTLDASSSNTSLAS 299


>SPBC30B4.08 |eri1||double-strand siRNA
           ribonuclease|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 313

 Score = 25.0 bits (52), Expect = 9.9
 Identities = 10/36 (27%), Positives = 18/36 (50%)
 Frame = -2

Query: 403 CLFFDRFSRSIIETIHHFMFCAVGTNAVPYAVTIFG 296
           CL FD   +SII+  H ++  ++      Y  ++ G
Sbjct: 108 CLLFDLIEKSIIDEFHSYVRPSMNPTLSDYCKSLTG 143


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,717,733
Number of Sequences: 5004
Number of extensions: 54665
Number of successful extensions: 156
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 153
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 156
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 305854096
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)