Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP07_F_J01
         (668 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_04_0808 - 28196563-28196735,28197369-28197440,28197540-281976...    42   6e-04
07_01_0129 - 959600-959625,960100-961428,961585-961657,962185-96...    29   3.3  
08_02_0377 + 16481232-16481361,16482501-16482547,16482634-164827...    28   5.9  
12_02_0736 + 22650641-22650689,22650827-22650975,22651783-226518...    28   7.7  
07_03_0377 + 17442942-17443529,17443616-17444158                       28   7.7  
03_01_0104 - 830884-831282,831511-832205,832368-833387,833570-83...    28   7.7  

>04_04_0808 -
           28196563-28196735,28197369-28197440,28197540-28197666,
           28198362-28198430,28198517-28198583,28198751-28198872,
           28199302-28199412,28199596-28199661,28200156-28200213,
           28200307-28200343,28200420-28200513,28200967-28201032,
           28201139-28201203,28201352-28201496,28201925-28202074,
           28202266-28202335,28202752-28202828,28202919-28202987,
           28203798-28203881,28204018-28204061,28204172-28204273,
           28204420-28204618,28204672-28204727,28204886-28204958,
           28205685-28205771,28205863-28205976,28206985-28207092,
           28207183-28207278,28207722-28207787,28208130-28208222,
           28208429-28208512,28208961-28209078,28209191-28209267,
           28209459-28209641,28210542-28210636,28210903-28211053,
           28212218-28212325,28212513-28212612,28212788-28212840,
           28214022-28214102
          Length = 1269

 Score = 41.5 bits (93), Expect = 6e-04
 Identities = 20/72 (27%), Positives = 33/72 (45%)
 Frame = +2

Query: 302 DGHCIWYGVCANSTEHKMVNCFYDGPAKPIEEKAMKIIEQYCPEIAKGGYSCCNYEQLNQ 481
           +G+C  YG+CA  ++ K++NC     A   +      I+  CP I   G  CC  +Q + 
Sbjct: 50  EGYCSMYGICAQRSDGKVLNCVNATKAVKPDTLFSARIQSLCPTIT--GDVCCTVDQFDT 107

Query: 482 LKVNIALAENLL 517
           L   +    N +
Sbjct: 108 LHQQVQQVNNTM 119


>07_01_0129 -
           959600-959625,960100-961428,961585-961657,962185-962226
          Length = 489

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 11/36 (30%), Positives = 20/36 (55%), Gaps = 2/36 (5%)
 Frame = +2

Query: 362 CFYDGPAKPIEEKAMKIIEQYCPE--IAKGGYSCCN 463
           CF+DGP + +E   ++ + + CPE  +    Y  C+
Sbjct: 425 CFFDGPWQRVEPAYVRRVNKICPEYLVLLDDYKICS 460


>08_02_0377 +
           16481232-16481361,16482501-16482547,16482634-16482711,
           16482826-16482896,16483005-16483086
          Length = 135

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 12/30 (40%), Positives = 18/30 (60%)
 Frame = -1

Query: 332 HKRRTICSDHLRPEQTGYVLLTPIEKTRQI 243
           H    I SD+  PE TGY LL  ++K+ ++
Sbjct: 61  HDVNMIVSDYCMPEMTGYDLLMEVKKSPRL 90


>12_02_0736 +
           22650641-22650689,22650827-22650975,22651783-22651839,
           22653534-22653611,22654688-22654953,22655249-22655351
          Length = 233

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 24/90 (26%), Positives = 40/90 (44%), Gaps = 5/90 (5%)
 Frame = +2

Query: 392 EEKAMKIIEQYCPEIAKGGYSCCNYEQLNQLKVNIALAENLLGRCPTCFQ-NFLK--PIC 562
           EE+A ++   +C E   G   CC+ E  +Q +    + + +     +CF    LK  PIC
Sbjct: 31  EEEAAEVACPFCDEEFDGFGLCCHIEDEHQAENRAGVYKLIHEVFLSCFHYRVLKVCPIC 90

Query: 563 GMACAVDQSKYLKPVKTEQFNG--THRRIS 646
             A  +D   ++       F G   +RR+S
Sbjct: 91  YDAVGMDLVSHITSEHPSFFKGKWRNRRVS 120


>07_03_0377 + 17442942-17443529,17443616-17444158
          Length = 376

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 14/33 (42%), Positives = 20/33 (60%)
 Frame = -1

Query: 605 LASSICSDRRRRPFHRSASKSSESTSGISPANF 507
           LA+ +  D RRRP   +A  + E  SG+ PA+F
Sbjct: 111 LAADVGDDVRRRPMPSAAPATEEEVSGL-PASF 142


>03_01_0104 -
           830884-831282,831511-832205,832368-833387,833570-833696,
           834342-834709,834780-835059,835137-835466
          Length = 1072

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 12/27 (44%), Positives = 14/27 (51%), Gaps = 1/27 (3%)
 Frame = +2

Query: 302 DGHCIWYGVCANSTEHKMVNC-FYDGP 379
           D HC+W     NS E  MV C  +D P
Sbjct: 476 DRHCLWEVPLVNSVERVMVYCGLHDNP 502


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,734,393
Number of Sequences: 37544
Number of extensions: 325656
Number of successful extensions: 838
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 824
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 838
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1691314196
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)