Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP07_F_J01
(668 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U53340-7|AAA96211.2| 1383|Caenorhabditis elegans Npc1 (human nie... 63 2e-10
L11247-2|AAK84521.1| 1274|Caenorhabditis elegans Npc1 (human nie... 56 2e-08
Z81513-10|CAB04183.1| 247|Caenorhabditis elegans Hypothetical p... 35 0.045
U97407-6|AAB52481.1| 751|Caenorhabditis elegans Tyrosinase prot... 29 3.9
Z81553-10|CAB04501.2| 668|Caenorhabditis elegans Hypothetical p... 28 6.9
U55856-7|AAA98025.1| 249|Caenorhabditis elegans Hypothetical pr... 28 6.9
AF039047-5|AAY86265.1| 188|Caenorhabditis elegans Hypothetical ... 28 6.9
Z47812-3|CAA87790.1| 158|Caenorhabditis elegans Hypothetical pr... 27 9.1
>U53340-7|AAA96211.2| 1383|Caenorhabditis elegans Npc1 (human
niemann pick c disease)related protein 1 protein.
Length = 1383
Score = 62.9 bits (146), Expect = 2e-10
Identities = 40/138 (28%), Positives = 63/138 (45%), Gaps = 16/138 (11%)
Frame = +2
Query: 302 DGHCIWYGVCANSTEHKMVNCFY-DGPAKPIE----EKAMKIIEQYCPEIAKGGYS-CCN 463
D CI G+C TE+ C D +P A + + ++CP + G CC
Sbjct: 19 DAGCIMRGLCQKHTENAYGPCVTNDTNVEPTAFDKTHPAYEKMVEFCPHLLTGDNKLCCT 78
Query: 464 YEQLNQLKVNIALAENLLGRCPTCFQNFLKPICGMACAVDQSKY-----LKPVK-----T 613
Q L IA A ++LGRCP+CF NF K C C+ +Q + +KP++ T
Sbjct: 79 PSQAEGLTKQIAQARHILGRCPSCFDNFAKLWCEFTCSPNQQDFVSISEMKPIEKKEGFT 138
Query: 614 EQFNGTHRRISEIDYYLS 667
++ ++ ++Y LS
Sbjct: 139 PEYQPAEAYVNTVEYRLS 156
>L11247-2|AAK84521.1| 1274|Caenorhabditis elegans Npc1 (human
niemann pick c disease)related protein 2 protein.
Length = 1274
Score = 56.0 bits (129), Expect = 2e-08
Identities = 27/73 (36%), Positives = 39/73 (53%), Gaps = 3/73 (4%)
Frame = +2
Query: 404 MKIIEQYCPEIAKG---GYSCCNYEQLNQLKVNIALAENLLGRCPTCFQNFLKPICGMAC 574
M E+YC + + CC QL + I+ A +LG CP+CF NF K C C
Sbjct: 66 MARFEKYCSYLVQEEDKAQVCCTELQLKGMTDRISNAATILGSCPSCFDNFAKLWCQFTC 125
Query: 575 AVDQSKYLKPVKT 613
+ DQSK++K ++T
Sbjct: 126 SPDQSKFMKVMET 138
>Z81513-10|CAB04183.1| 247|Caenorhabditis elegans Hypothetical
protein F26D2.13 protein.
Length = 247
Score = 35.1 bits (77), Expect = 0.045
Identities = 15/50 (30%), Positives = 29/50 (58%), Gaps = 3/50 (6%)
Frame = +2
Query: 317 WYG---VCANSTEHKMVNCFYDGPAKPIEEKAMKIIEQYCPEIAKGGYSC 457
WYG V A +++ + +CF DG A+P ++ ++ + CP++ G+ C
Sbjct: 58 WYGTTIVIAGTSDARPASCFSDGTARPNDQGMVRAAVELCPKLC--GFCC 105
>U97407-6|AAB52481.1| 751|Caenorhabditis elegans Tyrosinase protein
4 protein.
Length = 751
Score = 28.7 bits (61), Expect = 3.9
Identities = 12/39 (30%), Positives = 23/39 (58%), Gaps = 1/39 (2%)
Frame = +2
Query: 452 SCCNYEQLNQLKVNIALAENLLGRCPTCF-QNFLKPICG 565
SC + ++ + + N +AEN C +C+ Q+ L+ +CG
Sbjct: 618 SCAGWARVGECQKNPWMAENCRSSCNSCYTQSELRRMCG 656
>Z81553-10|CAB04501.2| 668|Caenorhabditis elegans Hypothetical
protein F56H6.12 protein.
Length = 668
Score = 27.9 bits (59), Expect = 6.9
Identities = 15/60 (25%), Positives = 32/60 (53%), Gaps = 1/60 (1%)
Frame = +1
Query: 424 LSRDSQRRLFVLQ-LRTTEPAQSEYRPCGKFAGEMPDVLSELFEADLWNGLRRRSEQILE 600
L+++ + +L++L + T+ S+ P K + D+ L E DL+ R+R Q+++
Sbjct: 550 LTKNIKYKLYILDAIPRTKYVVSQIAPMVKSGANLTDIDKLLVETDLYKMARKRHAQLIK 609
>U55856-7|AAA98025.1| 249|Caenorhabditis elegans Hypothetical
protein F31E8.1 protein.
Length = 249
Score = 27.9 bits (59), Expect = 6.9
Identities = 11/26 (42%), Positives = 16/26 (61%)
Frame = +1
Query: 76 FIYDYFIFYST*LTLEKRIFWTSSNY 153
F +FIFY+T R+FW SS++
Sbjct: 171 FSISFFIFYATSSNSLSRVFWESSSH 196
>AF039047-5|AAY86265.1| 188|Caenorhabditis elegans Hypothetical
protein K11D12.13 protein.
Length = 188
Score = 27.9 bits (59), Expect = 6.9
Identities = 23/65 (35%), Positives = 30/65 (46%), Gaps = 5/65 (7%)
Frame = +2
Query: 422 YCPEIAKGGYSCCNYEQLNQL----KVNIALAENLLGRCPTCFQNFLKP-ICGMACAVDQ 586
Y P+ AKG S C+YE + K NI A G C N+ P CG C VD+
Sbjct: 23 YLPQ-AKGTSSNCSYEASIRYHFDPKTNICHAFKYEG-CGGNVNNYETPGDCGQNCNVDE 80
Query: 587 SKYLK 601
Y++
Sbjct: 81 KTYIQ 85
>Z47812-3|CAA87790.1| 158|Caenorhabditis elegans Hypothetical
protein T05H10.3 protein.
Length = 158
Score = 27.5 bits (58), Expect = 9.1
Identities = 11/27 (40%), Positives = 15/27 (55%), Gaps = 1/27 (3%)
Frame = +2
Query: 302 DGHCIWY-GVCANSTEHKMVNCFYDGP 379
D H +W G C NST + + C +D P
Sbjct: 110 DEHVLWRSGKCLNSTVNYRIGCKFDDP 136
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,034,796
Number of Sequences: 27780
Number of extensions: 308814
Number of successful extensions: 894
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 847
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 893
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1508017654
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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