Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP07_F_I22
         (444 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23D3.11 |ayr1||1-acyldihydroxyacetone phosphate reductase |S...    28   0.56 
SPAC22F3.07c |atp20||F0-ATPase subunit G|Schizosaccharomyces pom...    27   1.3  
SPBC17D11.07c |rpn2||19S proteasome regulatory subunit Rpn2|Schi...    25   6.9  

>SPAC23D3.11 |ayr1||1-acyldihydroxyacetone phosphate reductase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 296

 Score = 28.3 bits (60), Expect = 0.56
 Identities = 17/74 (22%), Positives = 31/74 (41%)
 Frame = +3

Query: 72  LIKMASAVAKVPTLINTAITQARPKLNIFMKYARVELAPPKLSELPQIRQGIGNLITSAK 251
           ++ + S V+ VP   N A   ++  L  +    R+ELAP  +     +  G+   I S  
Sbjct: 130 IVNVNSLVSYVPFAFNAAYNASKAALLAYSNTLRIELAPFGVQVTSIMTGGVQTKIQSKP 189

Query: 252 TGAWKRQTVKEATL 293
            G      + E ++
Sbjct: 190 LGTMTEAAIPENSI 203


>SPAC22F3.07c |atp20||F0-ATPase subunit G|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 118

 Score = 27.1 bits (57), Expect = 1.3
 Identities = 10/37 (27%), Positives = 19/37 (51%)
 Frame = +3

Query: 261 WKRQTVKEATLNVLVGAEVIFWFYIGECIGKRHLVGY 371
           WK Q+ +    N  +  E++  F  G+ +G+R +  Y
Sbjct: 81  WKSQSSEAWGRNFFIAVEIVGIFCAGQMVGRRKITPY 117


>SPBC17D11.07c |rpn2||19S proteasome regulatory subunit
           Rpn2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 965

 Score = 24.6 bits (51), Expect = 6.9
 Identities = 11/28 (39%), Positives = 14/28 (50%)
 Frame = -2

Query: 377 NIVSNKVTFANAFTNVEPEDDFSSNQNI 294
           ++  N VTFANAF N     D     N+
Sbjct: 345 SVFHNAVTFANAFMNFGTSSDSFFRDNL 372


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,515,762
Number of Sequences: 5004
Number of extensions: 23918
Number of successful extensions: 61
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 60
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 61
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 162176800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)