Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP07_F_I21
(502 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_01_0158 - 1103461-1104186 43 1e-04
08_01_0202 - 1638978-1639571 41 5e-04
03_06_0609 - 35042276-35042388,35042476-35042527,35042624-350427... 31 0.69
03_06_0157 - 32039020-32039175,32039267-32039338,32039478-320396... 30 1.2
04_04_1582 - 34590698-34591199,34593849-34594690 29 2.1
03_01_0483 + 3689155-3689814 29 2.8
08_01_0229 + 1834102-1834358,1834442-1834901 28 4.8
05_02_0119 + 6793292-6793613,6795793-6795952,6796416-6796458,679... 28 4.8
01_01_0569 - 4214513-4214669,4215082-4216031,4216488-4216547 28 4.8
09_02_0161 + 5121977-5122318,5123883-5124007,5124815-5125112 27 6.4
11_08_0034 - 27827583-27827998,27828111-27829430,27829568-27831008 27 8.5
08_01_0246 - 2028701-2029060,2029149-2030606,2030729-2031160 27 8.5
07_03_0592 + 19805647-19805817,19805960-19806332,19807347-19807474 27 8.5
02_03_0120 + 15463163-15465250 27 8.5
>02_01_0158 - 1103461-1104186
Length = 241
Score = 43.2 bits (97), Expect = 1e-04
Identities = 25/54 (46%), Positives = 33/54 (61%), Gaps = 1/54 (1%)
Frame = +2
Query: 287 DVFVHQTAIARNNPRKAVRSVGDGEAVEFAVVAGEKG-FEAAGVTGPGGEPVKG 445
D+FVHQ++I + RS+ +GE VEFA+ E G +A VTGP G VKG
Sbjct: 31 DLFVHQSSIKADG----FRSLAEGEQVEFAISESEDGRTKAVDVTGPDGSFVKG 80
Score = 32.7 bits (71), Expect = 0.17
Identities = 13/24 (54%), Positives = 17/24 (70%)
Frame = +1
Query: 205 AEKVSGTVKWFNVKSGYGFINRND 276
A + GTVKWFN G+GFI+ +D
Sbjct: 4 AARHRGTVKWFNDTKGFGFISPDD 27
>08_01_0202 - 1638978-1639571
Length = 197
Score = 41.1 bits (92), Expect = 5e-04
Identities = 26/66 (39%), Positives = 38/66 (57%), Gaps = 2/66 (3%)
Frame = +2
Query: 287 DVFVHQTAIARNNPRKAVRSVGDGEAVEFAVVAGEKG-FEAAGVTGPGGEPVK-GSPYAA 460
D+FVHQ+++ + RS+ DG+ VEF+V +G G +A VT PGG + GS +
Sbjct: 30 DLFVHQSSLKSDG----YRSLNDGDVVEFSVGSGNDGRTKAVDVTAPGGGALTGGSRPSG 85
Query: 461 DKRRGY 478
RGY
Sbjct: 86 GGDRGY 91
Score = 35.9 bits (79), Expect = 0.018
Identities = 13/24 (54%), Positives = 18/24 (75%)
Frame = +1
Query: 205 AEKVSGTVKWFNVKSGYGFINRND 276
+E+V GTVKWF+ G+GFI +D
Sbjct: 3 SERVKGTVKWFDATKGFGFITPDD 26
>03_06_0609 -
35042276-35042388,35042476-35042527,35042624-35042725,
35043546-35043745,35045258-35045336,35045541-35045595,
35045947-35046122,35046386-35046988,35047077-35047265,
35048150-35048201,35048289-35048356,35048873-35048911,
35048912-35048970,35049639-35049782,35050136-35050238,
35050368-35050467,35050596-35050612
Length = 716
Score = 30.7 bits (66), Expect = 0.69
Identities = 14/47 (29%), Positives = 24/47 (51%)
Frame = -1
Query: 421 TSNTSCFKAFLPGNHGKLHRLSVADRAHSLTWVVTGDGSLMHKHIXP 281
T N ++ FLP G + L + D ++ W ++ + SL HK + P
Sbjct: 293 TENDCAWQRFLPS--GPIALLPIGDNYSNIVWTMSPEESLRHKSMSP 337
>03_06_0157 -
32039020-32039175,32039267-32039338,32039478-32039602,
32039678-32040559,32040623-32040692,32041248-32041739,
32041985-32042044,32042541-32042618,32043322-32044344
Length = 985
Score = 29.9 bits (64), Expect = 1.2
Identities = 14/30 (46%), Positives = 17/30 (56%)
Frame = +2
Query: 356 GEAVEFAVVAGEKGFEAAGVTGPGGEPVKG 445
GE+ E ++ GE E V GPGGEP G
Sbjct: 388 GESKEDEIIEGEPDPEMEVVAGPGGEPKVG 417
>04_04_1582 - 34590698-34591199,34593849-34594690
Length = 447
Score = 29.1 bits (62), Expect = 2.1
Identities = 15/41 (36%), Positives = 21/41 (51%)
Frame = +2
Query: 350 GDGEAVEFAVVAGEKGFEAAGVTGPGGEPVKGSPYAADKRR 472
GDG E + G+KG G G GG KGS ++++ R
Sbjct: 229 GDGGVEEGSAGGGKKGGGGGGGGGGGGHGEKGSAKSSEQER 269
>03_01_0483 + 3689155-3689814
Length = 219
Score = 28.7 bits (61), Expect = 2.8
Identities = 18/42 (42%), Positives = 22/42 (52%)
Frame = +2
Query: 350 GDGEAVEFAVVAGEKGFEAAGVTGPGGEPVKGSPYAADKRRG 475
GDG A AG G +AA G G +PV+GS +D RG
Sbjct: 62 GDGGADPVRGSAG--GSDAARGDGGGADPVRGSAGGSDAARG 101
Score = 27.9 bits (59), Expect = 4.8
Identities = 16/42 (38%), Positives = 21/42 (50%)
Frame = +2
Query: 350 GDGEAVEFAVVAGEKGFEAAGVTGPGGEPVKGSPYAADKRRG 475
GDG + V G +AA G G +PV+GS +D RG
Sbjct: 81 GDGGGAD-PVRGSAGGSDAARGDGGGADPVRGSAGGSDAARG 121
>08_01_0229 + 1834102-1834358,1834442-1834901
Length = 238
Score = 27.9 bits (59), Expect = 4.8
Identities = 9/12 (75%), Positives = 11/12 (91%)
Frame = -2
Query: 102 GVIGERRWWQRW 67
GV+GERR W+RW
Sbjct: 134 GVVGERRRWRRW 145
>05_02_0119 +
6793292-6793613,6795793-6795952,6796416-6796458,
6797015-6797335
Length = 281
Score = 27.9 bits (59), Expect = 4.8
Identities = 13/27 (48%), Positives = 14/27 (51%)
Frame = +2
Query: 395 GFEAAGVTGPGGEPVKGSPYAADKRRG 475
G EA G +GPGGE D RRG
Sbjct: 75 GVEAPGGSGPGGERTMAPANIDDSRRG 101
>01_01_0569 - 4214513-4214669,4215082-4216031,4216488-4216547
Length = 388
Score = 27.9 bits (59), Expect = 4.8
Identities = 17/38 (44%), Positives = 17/38 (44%)
Frame = +2
Query: 338 VRSVGDGEAVEFAVVAGEKGFEAAGVTGPGGEPVKGSP 451
VR G G A FAV G A G GGEP SP
Sbjct: 53 VRGGGGGGAALFAVPRLFVGLAAKRGAGDGGEPASRSP 90
>09_02_0161 + 5121977-5122318,5123883-5124007,5124815-5125112
Length = 254
Score = 27.5 bits (58), Expect = 6.4
Identities = 11/35 (31%), Positives = 19/35 (54%)
Frame = +1
Query: 199 VIAEKVSGTVKWFNVKSGYGFINRNDTKXRCVCAS 303
+++E+V GTVKWF+ + + VCA+
Sbjct: 1 MVSERVKGTVKWFDATAAMEATAATAGEEAAVCAT 35
>11_08_0034 - 27827583-27827998,27828111-27829430,27829568-27831008
Length = 1058
Score = 27.1 bits (57), Expect = 8.5
Identities = 13/35 (37%), Positives = 20/35 (57%)
Frame = -1
Query: 439 YWLTTGTSNTSCFKAFLPGNHGKLHRLSVADRAHS 335
+ + +NTS LPG+ GKLHRL + D ++
Sbjct: 102 FLIVLNLANTS-LTGTLPGDIGKLHRLELLDLGYN 135
>08_01_0246 - 2028701-2029060,2029149-2030606,2030729-2031160
Length = 749
Score = 27.1 bits (57), Expect = 8.5
Identities = 18/66 (27%), Positives = 26/66 (39%), Gaps = 4/66 (6%)
Frame = +2
Query: 299 HQTAIARNNPRKAVRSVGDGEA----VEFAVVAGEKGFEAAGVTGPGGEPVKGSPYAADK 466
HQ + P+ S DG A +E + G E+ G G GG P +
Sbjct: 29 HQQHQHQLPPQATTTSESDGRAPRDELEMSKSGGSDNLESGGGGGGGGSGGDQDPNQRPR 88
Query: 467 RRGYHR 484
++ YHR
Sbjct: 89 KKRYHR 94
>07_03_0592 + 19805647-19805817,19805960-19806332,19807347-19807474
Length = 223
Score = 27.1 bits (57), Expect = 8.5
Identities = 15/28 (53%), Positives = 16/28 (57%)
Frame = +2
Query: 305 TAIARNNPRKAVRSVGDGEAVEFAVVAG 388
TAI N AV +VGD AV F V AG
Sbjct: 68 TAILINGETLAVANVGDSRAVAFDVRAG 95
>02_03_0120 + 15463163-15465250
Length = 695
Score = 27.1 bits (57), Expect = 8.5
Identities = 17/43 (39%), Positives = 21/43 (48%), Gaps = 2/43 (4%)
Frame = +2
Query: 308 AIARNNPRKAVRSVGDGEAVEFAVVA--GEKGFEAAGVTGPGG 430
++ R N AV S GEA VA KGF++ V G GG
Sbjct: 357 SVRRKNQEHAVASEDMGEATLSMEVARAATKGFDSGNVIGVGG 399
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,619,632
Number of Sequences: 37544
Number of extensions: 213117
Number of successful extensions: 873
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 845
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 872
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1059318940
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -