Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP07_F_I15
         (653 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1442.10c |rpb3||DNA-directed RNA polymerase II subunit 3 |Sc...    27   1.8  
SPAC17C9.06 |sam50||SAM complex subunit Sam50 |Schizosaccharomyc...    27   2.4  
SPAC29B12.07 |sec16||multidomain vesicle coat component Sec16|Sc...    27   3.1  
SPCC777.13 |vps35||retromer complex subunit Vps35|Schizosaccharo...    26   4.1  
SPAC23C4.16c |atg15||triacylglycerol lipase Atg15 |Schizosacchar...    26   5.5  
SPCC338.17c |rad21||kleisin|Schizosaccharomyces pombe|chr 3|||Ma...    25   7.2  
SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces ...    25   9.5  

>SPCC1442.10c |rpb3||DNA-directed RNA polymerase II subunit 3
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 297

 Score = 27.5 bits (58), Expect = 1.8
 Identities = 14/58 (24%), Positives = 26/58 (44%)
 Frame = -2

Query: 430 PSIAGLKHRGPLKSVAKHHAQLGVRAHSLQVVLLEQGFWASSCSACCVKHTTNRLAHT 257
           P +A  K RGPL    +   ++ +R  + + +  E   W+ + +        N+L HT
Sbjct: 133 PILADPKSRGPLICKLRKEQEISLRCIAKKGIAKEHAKWSPTSAVAFEYDPWNKLQHT 190


>SPAC17C9.06 |sam50||SAM complex subunit Sam50 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 475

 Score = 27.1 bits (57), Expect = 2.4
 Identities = 16/46 (34%), Positives = 25/46 (54%)
 Frame = +2

Query: 41  EYVVPSY*K*NAFDSLKKLIGFVYQXYLRTHLRLLSIKGEFHYQNI 178
           EY  PS  +  A DSLK+ + + Y    R HL ++  KG++  Q +
Sbjct: 248 EYASPSV-RLEAGDSLKQSLSYTYTRDTRDHL-MIPTKGDYVRQTL 291


>SPAC29B12.07 |sec16||multidomain vesicle coat component
            Sec16|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1995

 Score = 26.6 bits (56), Expect = 3.1
 Identities = 16/45 (35%), Positives = 22/45 (48%)
 Frame = -3

Query: 639  DSRQHQLHQRHSRCQQMNFP*SSLTLRKLPSLLPFPCDPLLYSSL 505
            DS +  LH+R +   + N P         P  LP P  PLL+S+L
Sbjct: 1033 DSDKSSLHKRSAELSRNNSP--------RPDFLPLPNQPLLHSNL 1069


>SPCC777.13 |vps35||retromer complex subunit
           Vps35|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 785

 Score = 26.2 bits (55), Expect = 4.1
 Identities = 17/48 (35%), Positives = 22/48 (45%), Gaps = 1/48 (2%)
 Frame = +1

Query: 49  CAFLLK-IKCFR*LKKVNRVCLPXVFTNTFKTALYKRGISLSKYLGHY 189
           C FL +  + F+ +    +V L   F NT    LYK G SL   L  Y
Sbjct: 512 CIFLARNFRIFKCMDWAEKVRLLWEFVNTCINVLYKNGDSLELCLALY 559


>SPAC23C4.16c |atg15||triacylglycerol lipase Atg15
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 424

 Score = 25.8 bits (54), Expect = 5.5
 Identities = 9/36 (25%), Positives = 17/36 (47%)
 Frame = +3

Query: 288 TQHAEQLLAQNPCSSKTTCSECARTPSCAWCFATDF 395
           T H  Q +  +   +     +C+ TP+C  C+  +F
Sbjct: 384 THHRMQTVLNDVIDAYEKLPDCSHTPNCVDCYLWEF 419


>SPCC338.17c |rad21||kleisin|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 628

 Score = 25.4 bits (53), Expect = 7.2
 Identities = 16/43 (37%), Positives = 22/43 (51%)
 Frame = -1

Query: 488 DKQLIVGIENVGFIATTGTAFHCGIKTSRSIEVGGEAPRTAGS 360
           D Q  + I N G  A T  + H   ++  SIEVG +AP  A +
Sbjct: 199 DMQFHLPISNSG--AATPRSVHSDNQSQISIEVGRDAPAAAAT 239


>SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 3655

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 14/42 (33%), Positives = 15/42 (35%)
 Frame = -2

Query: 409  HRGPLKSVAKHHAQLGVRAHSLQVVLLEQGFWASSCSACCVK 284
            H      +   HAQL V   SL     E GFW      C  K
Sbjct: 2564 HEWEKAQLVYEHAQLKVCTGSLPYSPTEHGFWLDHWILCAQK 2605


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,489,417
Number of Sequences: 5004
Number of extensions: 48973
Number of successful extensions: 115
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 112
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 115
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 295793106
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)