Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP07_F_I15
(653 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z69790-3|CAD56579.1| 1234|Caenorhabditis elegans Hypothetical pr... 33 0.13
Z69790-2|CAA93653.2| 1271|Caenorhabditis elegans Hypothetical pr... 33 0.13
AF339882-1|AAK14396.1| 1329|Caenorhabditis elegans attractin pro... 33 0.13
Z35604-2|CAA84677.1| 809|Caenorhabditis elegans Hypothetical pr... 29 3.8
U19744-1|AAA85704.1| 809|Caenorhabditis elegans integrin beta p... 29 3.8
AL032631-1|CAB63336.1| 453|Caenorhabditis elegans Hypothetical ... 29 3.8
Z48809-9|CAA88749.1| 1270|Caenorhabditis elegans Hypothetical pr... 28 6.7
Z48583-5|CAA88473.1| 1270|Caenorhabditis elegans Hypothetical pr... 28 6.7
AF036694-2|AAY86261.1| 176|Caenorhabditis elegans Hypothetical ... 27 8.8
>Z69790-3|CAD56579.1| 1234|Caenorhabditis elegans Hypothetical
protein F33C8.1b protein.
Length = 1234
Score = 33.5 bits (73), Expect = 0.13
Identities = 12/32 (37%), Positives = 17/32 (53%)
Frame = +3
Query: 321 PCSSKTTCSECARTPSCAWCFATDFNGPRCFN 416
PC+ + CS+C C WC +T+ RC N
Sbjct: 790 PCAQRNNCSDCTDLEQCMWCPSTN----RCIN 817
Score = 30.3 bits (65), Expect = 1.2
Identities = 10/24 (41%), Positives = 11/24 (45%)
Frame = +3
Query: 309 LAQNPCSSKTTCSECARTPSCAWC 380
LA C +T C CA C WC
Sbjct: 659 LALKTCEEQTDCVSCASKSGCGWC 682
Score = 30.3 bits (65), Expect = 1.2
Identities = 9/18 (50%), Positives = 9/18 (50%)
Frame = +3
Query: 324 CSSKTTCSECARTPSCAW 377
C TC EC R P C W
Sbjct: 853 CEEHKTCGECQRDPGCGW 870
Score = 27.5 bits (58), Expect = 8.8
Identities = 7/19 (36%), Positives = 10/19 (52%)
Frame = +3
Query: 321 PCSSKTTCSECARTPSCAW 377
PC+ + C C +P C W
Sbjct: 719 PCNMENNCGSCRISPHCTW 737
>Z69790-2|CAA93653.2| 1271|Caenorhabditis elegans Hypothetical
protein F33C8.1a protein.
Length = 1271
Score = 33.5 bits (73), Expect = 0.13
Identities = 12/32 (37%), Positives = 17/32 (53%)
Frame = +3
Query: 321 PCSSKTTCSECARTPSCAWCFATDFNGPRCFN 416
PC+ + CS+C C WC +T+ RC N
Sbjct: 827 PCAQRNNCSDCTDLEQCMWCPSTN----RCIN 854
Score = 30.3 bits (65), Expect = 1.2
Identities = 10/24 (41%), Positives = 11/24 (45%)
Frame = +3
Query: 309 LAQNPCSSKTTCSECARTPSCAWC 380
LA C +T C CA C WC
Sbjct: 659 LALKTCEEQTDCVSCASKSGCGWC 682
Score = 30.3 bits (65), Expect = 1.2
Identities = 9/18 (50%), Positives = 9/18 (50%)
Frame = +3
Query: 324 CSSKTTCSECARTPSCAW 377
C TC EC R P C W
Sbjct: 890 CEEHKTCGECQRDPGCGW 907
Score = 27.5 bits (58), Expect = 8.8
Identities = 7/19 (36%), Positives = 10/19 (52%)
Frame = +3
Query: 321 PCSSKTTCSECARTPSCAW 377
PC+ + C C +P C W
Sbjct: 719 PCNMENNCGSCRISPHCTW 737
>AF339882-1|AAK14396.1| 1329|Caenorhabditis elegans attractin
protein.
Length = 1329
Score = 33.5 bits (73), Expect = 0.13
Identities = 12/32 (37%), Positives = 17/32 (53%)
Frame = +3
Query: 321 PCSSKTTCSECARTPSCAWCFATDFNGPRCFN 416
PC+ + CS+C C WC +T+ RC N
Sbjct: 827 PCAQRNNCSDCTDLEQCMWCPSTN----RCIN 854
Score = 30.3 bits (65), Expect = 1.2
Identities = 10/24 (41%), Positives = 11/24 (45%)
Frame = +3
Query: 309 LAQNPCSSKTTCSECARTPSCAWC 380
LA C +T C CA C WC
Sbjct: 659 LALKTCEEQTDCVSCASKSGCGWC 682
Score = 30.3 bits (65), Expect = 1.2
Identities = 9/18 (50%), Positives = 9/18 (50%)
Frame = +3
Query: 324 CSSKTTCSECARTPSCAW 377
C TC EC R P C W
Sbjct: 890 CEEHKTCGECQRDPGCGW 907
Score = 27.5 bits (58), Expect = 8.8
Identities = 7/19 (36%), Positives = 10/19 (52%)
Frame = +3
Query: 321 PCSSKTTCSECARTPSCAW 377
PC+ + C C +P C W
Sbjct: 719 PCNMENNCGSCRISPHCTW 737
>Z35604-2|CAA84677.1| 809|Caenorhabditis elegans Hypothetical
protein ZK1058.2 protein.
Length = 809
Score = 28.7 bits (61), Expect = 3.8
Identities = 20/53 (37%), Positives = 27/53 (50%), Gaps = 5/53 (9%)
Frame = +3
Query: 339 TCSECART-PSCAWCFATDFNG----PRCFNPAMEGGTGGCDEAYIFNPDNQL 482
TCS C + SCAWC A F+ RC + A + GC +YI +P +L
Sbjct: 49 TCSACIQYHESCAWCGAPMFDEKKPYARCDSRA-KLMEHGCPNSYIEDPATKL 100
>U19744-1|AAA85704.1| 809|Caenorhabditis elegans integrin beta
pat-3 protein.
Length = 809
Score = 28.7 bits (61), Expect = 3.8
Identities = 20/53 (37%), Positives = 27/53 (50%), Gaps = 5/53 (9%)
Frame = +3
Query: 339 TCSECART-PSCAWCFATDFNG----PRCFNPAMEGGTGGCDEAYIFNPDNQL 482
TCS C + SCAWC A F+ RC + A + GC +YI +P +L
Sbjct: 49 TCSACIQYHESCAWCGAPMFDEKKPYARCDSRA-KLMEHGCPNSYIEDPATKL 100
>AL032631-1|CAB63336.1| 453|Caenorhabditis elegans Hypothetical
protein Y106G6H.1 protein.
Length = 453
Score = 28.7 bits (61), Expect = 3.8
Identities = 15/31 (48%), Positives = 18/31 (58%)
Frame = -2
Query: 496 AGSTNS*LSGLKM*ASSQPPVPPSIAGLKHR 404
AG+T+S SG SS PP PP I+ K R
Sbjct: 122 AGATDSSTSGASDAPSSTPPPPPKISDKKKR 152
>Z48809-9|CAA88749.1| 1270|Caenorhabditis elegans Hypothetical protein
T01E8.5 protein.
Length = 1270
Score = 27.9 bits (59), Expect = 6.7
Identities = 11/24 (45%), Positives = 18/24 (75%), Gaps = 1/24 (4%)
Frame = -1
Query: 104 TLLTFLSYRKH-FIFNRKAQHILF 36
TL+TF S++KH FI+N + ++F
Sbjct: 1057 TLITFFSHKKHRFIYNENFKKLIF 1080
>Z48583-5|CAA88473.1| 1270|Caenorhabditis elegans Hypothetical protein
T01E8.5 protein.
Length = 1270
Score = 27.9 bits (59), Expect = 6.7
Identities = 11/24 (45%), Positives = 18/24 (75%), Gaps = 1/24 (4%)
Frame = -1
Query: 104 TLLTFLSYRKH-FIFNRKAQHILF 36
TL+TF S++KH FI+N + ++F
Sbjct: 1057 TLITFFSHKKHRFIYNENFKKLIF 1080
>AF036694-2|AAY86261.1| 176|Caenorhabditis elegans Hypothetical
protein CD4.11 protein.
Length = 176
Score = 27.5 bits (58), Expect = 8.8
Identities = 11/24 (45%), Positives = 15/24 (62%)
Frame = -3
Query: 588 NFP*SSLTLRKLPSLLPFPCDPLL 517
N P S+ +R + SL PFP P+L
Sbjct: 60 NLPYSATEIRSISSLTPFPVKPML 83
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,020,247
Number of Sequences: 27780
Number of extensions: 290204
Number of successful extensions: 932
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 868
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 932
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1455289764
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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