Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP07_F_I10
         (653 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC30D11.01c ||SPAC56F8.01|alpha-glucosidase|Schizosaccharomyce...    27   2.4  
SPAC144.12 |||ribose 5-phosphate isomerase |Schizosaccharomyces ...    27   3.1  
SPBC18H10.15 |ppk23||serine/threonine protein kinase Ppk23|Schiz...    25   7.2  
SPAC17A5.07c |ulp2||SUMO deconjugating cysteine peptidase Ulp2 |...    25   9.5  

>SPAC30D11.01c ||SPAC56F8.01|alpha-glucosidase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 993

 Score = 27.1 bits (57), Expect = 2.4
 Identities = 11/16 (68%), Positives = 13/16 (81%)
 Frame = +3

Query: 141 LFKFNFYTSFTFTALS 188
           LFKFNF T+F FT L+
Sbjct: 3   LFKFNFTTAFLFTILA 18


>SPAC144.12 |||ribose 5-phosphate isomerase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 274

 Score = 26.6 bits (56), Expect = 3.1
 Identities = 12/28 (42%), Positives = 18/28 (64%)
 Frame = -3

Query: 501 CIFSSKII*FTDKQLLSNSDSRLNNESL 418
           C+F  K+I F  K+L+  +DSR N+  L
Sbjct: 112 CLFQEKLIAFLAKRLVIVADSRKNSHVL 139


>SPBC18H10.15 |ppk23||serine/threonine protein kinase
           Ppk23|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 398

 Score = 25.4 bits (53), Expect = 7.2
 Identities = 14/34 (41%), Positives = 21/34 (61%)
 Frame = +2

Query: 428 LLSRESELDKSCLSVN*MILLEKIQYGGSLVVYK 529
           L+    EL KSC S++   +LEKI+ G   +VY+
Sbjct: 58  LMGNTPEL-KSCNSIDDYEILEKIEEGSYGIVYR 90


>SPAC17A5.07c |ulp2||SUMO deconjugating cysteine peptidase Ulp2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 652

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 8/16 (50%), Positives = 13/16 (81%)
 Frame = +1

Query: 160 TLPSLLQHFPVMLFIE 207
           TLP LL H P+++F++
Sbjct: 23  TLPRLLIHIPILIFLQ 38


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,256,556
Number of Sequences: 5004
Number of extensions: 39633
Number of successful extensions: 67
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 65
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 67
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 295793106
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)