Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP07_F_I01
         (582 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U39851-9|AAF99870.1|  247|Caenorhabditis elegans Ribosomal prote...   153   1e-37
U41036-4|AAT92061.1| 1018|Caenorhabditis elegans Hypothetical pr...    27   9.7  
U41036-3|AAL06055.1| 1030|Caenorhabditis elegans Hypothetical pr...    27   9.7  
U41036-2|AAA82385.2| 1086|Caenorhabditis elegans Hypothetical pr...    27   9.7  
U23518-4|ABB88231.1|  450|Caenorhabditis elegans Nuclear hormone...    27   9.7  

>U39851-9|AAF99870.1|  247|Caenorhabditis elegans Ribosomal protein,
           small subunitprotein 3 protein.
          Length = 247

 Score =  153 bits (370), Expect = 1e-37
 Identities = 71/93 (76%), Positives = 80/93 (86%)
 Frame = +3

Query: 249 ITESNFXIPEQSVELYAEKVATRGLCAIAQAESLRYXLIGGLAVRRACYGVLRFIMESGA 428
           + +  F   E SVELYAEKV+ RGLCA+AQ ESLRY L+GGLAVRRACYGVLRFIMESGA
Sbjct: 74  VVQKRFGFEEGSVELYAEKVSNRGLCAVAQCESLRYKLVGGLAVRRACYGVLRFIMESGA 133

Query: 429 RGCEVVVSGKLRGXRAKSMKFVDGLMIHSGRPL 527
           +G EV+VSGKLRG RAK+MKFVDGLMIHSG P+
Sbjct: 134 QGVEVIVSGKLRGQRAKAMKFVDGLMIHSGHPV 166



 Score =  105 bits (252), Expect = 2e-23
 Identities = 78/189 (41%), Positives = 98/189 (51%), Gaps = 4/189 (2%)
 Frame = +1

Query: 28  MACEQYCKRTRKFVGXGVFKAELNEFLTMELAEDGYSGVEVRVTPIRSEIIIMATXTXSV 207
           MA  Q   + +K V  G+FKAELN FL  ELAEDGYSGVEVR TP R+E+IIMAT T +V
Sbjct: 1   MAANQNVTKKKKAVIGGIFKAELNNFLMKELAEDGYSGVEVRSTPARAEVIIMATRTQNV 60

Query: 208 LXEKGRXIRELTSVLQNRISXFQSNL---*NCMLKRWLLVVFAL-SPRPNL*DTXLSEVS 375
           L E+GR I+ELTSV+Q R    + ++      +  R L  V    S R  L        +
Sbjct: 61  LGERGRRIKELTSVVQKRFGFEEGSVELYAEKVSNRGLCAVAQCESLRYKLVGGLAVRRA 120

Query: 376 LYVVLAMVFSVSSWNLVPVVVKLLYLASCVVXVPNQ*SL*MDS*STLGDPCNDYVNTATX 555
            Y VL  +   S    V V+V           +     L + S    G P NDY+  A  
Sbjct: 121 CYGVLRFIME-SGAQGVEVIVSGKLRGQRAKAMKFVDGLMIHS----GHPVNDYIQQAVR 175

Query: 556 HVLLRQGVL 582
           HV LRQGV+
Sbjct: 176 HVQLRQGVI 184


>U41036-4|AAT92061.1| 1018|Caenorhabditis elegans Hypothetical
           protein T14E8.1c protein.
          Length = 1018

 Score = 27.1 bits (57), Expect = 9.7
 Identities = 17/59 (28%), Positives = 23/59 (38%), Gaps = 3/59 (5%)
 Frame = -2

Query: 383 TYSETSDKX---VS*RFGLGDSAKTTSSHLFSIQFYRLLWNXEIRFCNTEVSSRIXRPF 216
           TYS   D+    +  R+G GD+      H      YR  W  +      E+  RI  PF
Sbjct: 358 TYSRLDDESSPTLCVRYGRGDALDNCQLHTAKSNSYRYGWLEDYNVLQGELMMRIPYPF 416


>U41036-3|AAL06055.1| 1030|Caenorhabditis elegans Hypothetical
           protein T14E8.1b protein.
          Length = 1030

 Score = 27.1 bits (57), Expect = 9.7
 Identities = 17/59 (28%), Positives = 23/59 (38%), Gaps = 3/59 (5%)
 Frame = -2

Query: 383 TYSETSDKX---VS*RFGLGDSAKTTSSHLFSIQFYRLLWNXEIRFCNTEVSSRIXRPF 216
           TYS   D+    +  R+G GD+      H      YR  W  +      E+  RI  PF
Sbjct: 358 TYSRLDDESSPTLCVRYGRGDALDNCQLHTAKSNSYRYGWLEDYNVLQGELMMRIPYPF 416


>U41036-2|AAA82385.2| 1086|Caenorhabditis elegans Hypothetical
           protein T14E8.1a protein.
          Length = 1086

 Score = 27.1 bits (57), Expect = 9.7
 Identities = 17/59 (28%), Positives = 23/59 (38%), Gaps = 3/59 (5%)
 Frame = -2

Query: 383 TYSETSDKX---VS*RFGLGDSAKTTSSHLFSIQFYRLLWNXEIRFCNTEVSSRIXRPF 216
           TYS   D+    +  R+G GD+      H      YR  W  +      E+  RI  PF
Sbjct: 358 TYSRLDDESSPTLCVRYGRGDALDNCQLHTAKSNSYRYGWLEDYNVLQGELMMRIPYPF 416


>U23518-4|ABB88231.1|  450|Caenorhabditis elegans Nuclear hormone
           receptor familyprotein 21, isoform e protein.
          Length = 450

 Score = 27.1 bits (57), Expect = 9.7
 Identities = 17/46 (36%), Positives = 27/46 (58%), Gaps = 2/46 (4%)
 Frame = -2

Query: 332 DSAKTTSS--HLFSIQFYRLLWNXEIRFCNTEVSSRIXRPFSXSTL 201
           D+A T+S+  +L S++ +    + E+  C TEVS+    P S STL
Sbjct: 105 DTASTSSASPNLVSVEMHPYTKSEEVE-CQTEVSTISSHPTSPSTL 149


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,406,415
Number of Sequences: 27780
Number of extensions: 232572
Number of successful extensions: 573
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 547
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 573
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1215936170
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)